[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 170 items for (author: yoon & ch)

EMDB-70288:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

PDB-9oal:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

EMDB-53474:
CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Method: single particle / : Yoon D, Nosol K, Rasouli A, Bang-Soerensen R, Irobalieva RN, Liu H, Tajkhorshid E, Locher KP

PDB-9qzq:
CryoEM structure of nanodisc-reconstituted human NTCP in complex with grafted NTCP_Nb1 and NabFab
Method: single particle / : Yoon D, Nosol K, Rasouli A, Bang-Soerensen R, Irobalieva RN, Liu H, Tajkhorshid E, Locher KP

EMDB-70451:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex closed conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

EMDB-70453:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex 1 RBD up conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

EMDB-70454:
Apo SARS-COV-2-6P-MUT7 S PROTEIN closed conformation
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

EMDB-70455:
APO SARS-COV-2-6P-MUT7 S PROTEIN 1 RBD UP CONFORMATION
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

PDB-9og4:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex closed conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

PDB-9og5:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex 1 RBD up conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

PDB-9og6:
Apo SARS-COV-2-6P-MUT7 S PROTEIN closed conformation
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

PDB-9og7:
APO SARS-COV-2-6P-MUT7 S PROTEIN 1 RBD UP CONFORMATION
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

EMDB-72209:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-72215:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449; G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-63603:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-65045:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

PDB-9m3f:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

PDB-9vg7:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-47268:
Ternary complex of CRBN-DDB1-PPIL4 RRM domain with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-47269:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-47270:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216 local refinement
Method: single particle / : Baek K, Fischer ES

PDB-9dwv:
Ternary complex of CRBN-DDB1-PPIL4 RRM domain with FPFT-2216
Method: single particle / : Baek K, Fischer ES

PDB-9dww:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-54139:
Structure of Avast type 5 activator (Gp316, JADA jumbophage protein)
Method: single particle / : Pacesa M, Muralidharan A, Brouns SJJ

EMDB-61642:
Cryo-EM structure of human BKca channel-compound 10b complex
Method: single particle / : Kim S, Park S, Lee NY, Lee EY, Lee N, Roh EC, Kim YG, Kim HJ, Jin MS, Park CS, Kim YC

EMDB-61643:
Cryo-EM structure of human BKca channel-compound 51b complex
Method: single particle / : Kim S, Park S, Lee NY, Lee EY, Lee N, Roh EC, Kim YG, Kim HJ, Jin MS, Park CS, Kim YC

PDB-9jo3:
Cryo-EM structure of human BKca channel-compound 10b complex
Method: single particle / : Kim S, Park S, Lee NY, Lee EY, Lee N, Roh EC, Kim YG, Kim HJ, Jin MS, Park CS, Kim YC

PDB-9jo4:
Cryo-EM structure of human BKca channel-compound 51b complex
Method: single particle / : Kim S, Park S, Lee NY, Lee EY, Lee N, Roh EC, Kim YG, Kim HJ, Jin MS, Park CS, Kim YC

EMDB-39688:
BA.2.86 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-39689:
Structure of BA.2.86 spike protein in complex with ACE2.
Method: single particle / : Wang YJ, Zang X, Sun L

EMDB-39690:
Structure of JN.1 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-39691:
The JN.1 spike protein (S) in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

PDB-8yzb:
BA.2.86 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

PDB-8yzc:
Structure of BA.2.86 spike protein in complex with ACE2.
Method: single particle / : Wang YJ, Zang X, Sun L

PDB-8yzd:
Structure of JN.1 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

PDB-8yze:
The JN.1 spike protein (S) in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-38333:
Cryo-EM map of the E2 inner core component of pyruvate dehydrogenase complex
Method: single particle / : Kim H, Jeong MS, An MY, Jung HS

EMDB-38334:
Cryo-EM map of the E2 inner core component of pyruvate dehydrogenase complex
Method: single particle / : Kim H, Jeong MS, An MY, Jung HS

EMDB-38335:
Cryo-EM map of the E2 inner core component of pyruvate dehydrogenase complex
Method: single particle / : Kim H, Jeong MS, An MY, Jung HS

EMDB-38336:
Cryo-EM map of the E2 inner core component of pyruvate dehydrogenase complex
Method: single particle / : Kim H, Jeong MS, An MY, Jung HS

EMDB-38340:
Cryo-EM map of the E2 inner core component of pyruvate dehydrogenase complex
Method: single particle / : Kim H, Jeong MS, An MY, Jung HS

EMDB-37318:
DegQ-b-casein complex
Method: single particle / : Lee IG, Jeon H

EMDB-37333:
Structure of DegQ-b-casein complex
Method: single particle / : Lee IG, Jeon H

PDB-8w69:
DegQ-b-casein complex
Method: single particle / : Lee IG, Jeon H

EMDB-60647:
Cryo-EM structure of the human P2X3 receptor-compound 26a complex
Method: single particle / : Kim S, Kim GR, Kim YO, Han X, Nagel J, Kim J, Song DI, Muller CE, Yoon MH, Jin MS, Kim YC

PDB-9ik1:
Cryo-EM structure of the human P2X3 receptor-compound 26a complex
Method: single particle / : Kim S, Kim GR, Kim YO, Han X, Nagel J, Kim J, Song DI, Muller CE, Yoon MH, Jin MS, Kim YC

EMDB-37257:
Bacterial serine protease
Method: single particle / : Lee IG, Jeon H

EMDB-37331:
Cryo-EM structure of the DegQ dodecamer with a lysozyme
Method: single particle / : Lee IG, Jeon H

PDB-8kic:
Bacterial serine protease
Method: single particle / : Lee IG, Jeon H

EMDB-37157:
State 2 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5
Method: single particle / : Sun L, Mao Q, Wang Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more