[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 61 items for (author: xiao & yx)

EMDB-80928:
Local refinement of the mpox virus A35R protein in complexed with 17H1 Fab
Method: single particle / : Xiao YX, He MZ

EMDB-63783:
Cryo-EM structure of human FcRL4 bound to IgA-Fc/J
Method: single particle / : Wang YX, Su C, Xiao JY

EMDB-69467:
SARS-CoV-2 polymerase with incorporated and pre-incorporated AT-9052-Sp
Method: single particle / : Zhu YX, Shi H, Wang MF

EMDB-70224:
amyloid fibril of recombinant full-length 2N4R tau complexed with unfractionated mouse liver RNA and seeded by Alzheimer's disease tau fibrils
Method: helical / : Jiang YX, Sawaya MR, Abskharon R, Ge P, Boyer DR, Eisenberg DS

EMDB-70227:
amyloid fibril of recombinant full-length 2N4R tau complexed with mouse liver 18S ribosomal RNA
Method: helical / : Jiang YX, Sawaya MR, Abskharon R, Ge P, Boyer DR, Eisenberg DS

EMDB-64929:
Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:2:2
Method: single particle / : Luo Z, Shen Z, Liao G, Tang X, Pan X

EMDB-64933:
Cryo-EM structure of the multi-component acyltransferase complex MucABC from Streptococcus macacae at a stoichiometric ratio of 4:4:4
Method: single particle / : Luo Z, Shen Z, Liao G, Tang X, Pan X

EMDB-63948:
Cryo-EM structure of conivaptan-bound human vasopressin V2 receptor complex with Fab
Method: single particle / : Jiang Y, You CZ, Zhang TW, Xu YW, Tan YX

EMDB-63949:
Cryo-EM structure of tolvaptan-bound human vasopressin V2 receptor complex with Fab
Method: single particle / : Jiang Y, You CZ, Zhang TW, Xu YW, Tan YX

EMDB-62490:
Cryo-EM structure of Saccharomyces cerevisiae Mitochondrial Respiratory Complex II
Method: single particle / : Li ZW, Ye Y, Yang GF

EMDB-62491:
Cryo-EM structure of Saccharomyces cerevisiae Mitochondrial Respiratory Complex II in UQ1-bound state
Method: single particle / : Li ZW, Ye Y, Yang GF

EMDB-62495:
Cryo-EM structure of Saccharomyces cerevisiae Mitochondrial Respiratory Complex II in pydiflumetofen-bound state
Method: single particle / : Li ZW, Ye Y, Yang GF

EMDB-63115:
Cryo-EM structure of Saccharomyces cerevisiae Mitochondrial Respiratory Complex II in Y19315-bound state
Method: single particle / : Li ZW, Ye Y, Yang GF

EMDB-60663:
SARS-CoV-2 E-RTC bound to pRNA-nsp9 and GDP-BeF3-
Method: single particle / : Yan LM, Huang YC, Liu YX, Rao ZH, Lou ZY

EMDB-62692:
SARS-CoV-2 C-RTC with 13-TP
Method: single particle / : Huang YC, Liang L, Liu YX, Yan LM, Lou ZY, Rao ZH

EMDB-44181:
Filament of D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44182:
Filament of D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44183:
Filament of D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44184:
Filament of Tau in complex with D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44185:
Filament of Tau in complex with D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44186:
Filament of Tau in complex with D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44187:
Alzheimer's Tau Paired Helical Filaments, determined by CryoEM, before addition of D-peptide disaggregants
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-39291:
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in pyraclostrobin-bound state
Method: single particle / : Ye Y, Li ZW, Yang GF

EMDB-39323:
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in YF23694-bound state
Method: single particle / : Ye Y, Li ZW, Yang GF

EMDB-60256:
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in Metyltetraprole-bound state
Method: single particle / : Ye Y, Li ZW, Yang GF

EMDB-60317:
Cryo-EM structure of pyraclostrobin-bound porcine bc1 complex
Method: single particle / : Wang YX, Sun JY, Li ZW, Cui GR, Yang GF

EMDB-60320:
Cryo-EM structure of Metyltetraprole-bound porcine bc1 complex
Method: single particle / : Wang YX, Sun JY, Cui GR, Yang GF

EMDB-60323:
Cryo-EM structure of YF23694-bound porcine bc1 complex
Method: single particle / : Wang YX, Sun JY, Cui GR, Yang GF

EMDB-37936:
Cryo-EM structure of human CD5L bound to IgM-Fc/J
Method: single particle / : Wang YX, Su C, Xiao JY

EMDB-37937:
Local map of human CD5L bound to IgM-Fc/J
Method: single particle / : Wang YX, Su C, Xiao JY

EMDB-60254:
Vesamicol-bound VAChT
Method: single particle / : Zhang Z, Zhang Y, Dai F, Zhang YX, Lee CH

EMDB-60255:
Acetylcholine-bound VAChT
Method: single particle / : Zhang Z, Zhang Y, Dai F, Zhang YX, Lee CH

EMDB-37375:
Allosteric regulation of nitrate transporter NRT via the signalling protein PII
Method: single particle / : Li B, Zhou CZ, Chen YX, Jiang YL

EMDB-37644:
Cryo-EM structure of cyanobacterial nitrate/nitrite transporter NrtBCD in complex with signalling protein PII
Method: single particle / : Li B, Zhou CZ, Chen YX, Jiang YL

EMDB-37645:
Cryo-EM structure of cyanobacterial nitrate/nitrite transporter NrtBCD in complex with nitrate
Method: single particle / : Li B, Zhou CZ, Chen YX, Jiang YL

EMDB-33990:
Cryo-EM structure of EBV gHgL-gp42 in complex with mAbs 3E8 and 5E3 (localized refinement)
Method: single particle / : Liu L, Sun H, Jiang Y, Hong J, Zheng Q, Li S, Chen Y, Xia N

EMDB-33992:
Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 10E4 (localized refinement)
Method: single particle / : Liu L, Sun H, Jiang Y, Hong J, Zheng Q, Li S, Chen Y, Xia N

EMDB-33993:
Cryo-EM density map of EBV gHgL-gp42 in complex with four mAbs 5E3, 3E8, 6H2 and 10E4
Method: single particle / : Liu L, Sun H, Jiang Y, Liu X, Zhao D, Zheng Q, Li S, Chen Y, Xia N

EMDB-33994:
Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 6H2 (localized refinement)
Method: single particle / : Liu L, Sun H, Jiang Y, Hong J, Zheng Q, Li S, Chen Y, Xia N

EMDB-29903:
Structure of LARP7 protein p65-telomerase RNA complex in telomerase
Method: single particle / : Wang Y, He Y, Yang Y, Singh M, Eichhorn CD, Zhou ZH, Feigon J

EMDB-33102:
Cryo-EM structure of EBV glycoprotein complex gHgL-gp42 bound by a neutralizing antibody 6H2
Method: single particle / : Zheng Q, Hong J, Zhang X, Chen Y, Li S, Xia N

EMDB-24953:
Cryo-EM structure of TMEM106B fibrils extracted from a FTLD-TDP patient, polymorph 1
Method: helical / : Cao Q, Jiang Y

EMDB-24954:
Cryo-EM structure of TMEM106B fibrils extracted from a FTLD-TDP patient, polymorph 2
Method: helical / : Cao Q, Jiang Y

EMDB-24955:
Cryo-EM structure of TMEM106B fibrils extracted from a FTLD-TDP patient, polymorph 3
Method: helical / : Cao Q, Jiang Y

EMDB-0775:
Cryo-EM structure of the human concentrative nucleoside transporter CNT3
Method: single particle / : Zhou YX, Liao LH

EMDB-9694:
The complete structure of yeast COMPASS
Method: single particle / : Wang YX, Ding ZY

EMDB-9600:
The structure of CVA10 virus mature virion
Method: single particle / : Cui YX, Zheng QB

EMDB-9602:
The structure of CVA10 virus A-particle
Method: single particle / : Cui YX, Zheng QB

EMDB-9606:
The structure of CVA10 virus A-particle
Method: single particle / : Zhu R, Zheng QB, Xu LF, Cui YX, Li SW, Yan XD, Zhou ZH, Cheng T

EMDB-6615:
State 1 of cryo-EM structure of the yeast pre-60S particles isolated with Nog2-TAP
Method: single particle / : Shan W, Beril K, Kaige Y, Hailey B, Yi XZ, Dan T, Michael G, Yi Y, Zhi FL, Jelena J, Cheng YM, Jian LL, Meng QD, Woolford Jr JL, Ning G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more