[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 259 items for (author: wen & tl)

EMDB-17296:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

PDB-8oyu:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

EMDB-44587:
Cryo-EM Structure of the Helicobacter pylori dcagT PR
Method: single particle / : Roberts JR

EMDB-42290:
Cryo-EM Structure of the Helicobacter pylori CagYdAP OMC
Method: single particle / : Roberts JR

EMDB-42393:
Cryo-EM Structure of the Helicobacter pylori dcagM PR
Method: single particle / : Roberts JR

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-18941:
SARS-CoV-2 S (Spike) protein (BA.1) in complex with VHH Ma16B06 (sub-volume of two adjacent RBD-VHH modules)
Method: single particle / : Guttler T, Aksu M, Gorlich D

EMDB-40789:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-40790:
Map focused on acidic patch BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-40791:
Overall map of BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

PDB-8svf:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-27781:
Cryo-EM structure of 227 Fab in complex with (NPNA)8 peptide
Method: single particle / : Martin GM, Ward AB

EMDB-27784:
Cryo-EM structure of 239 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

EMDB-27785:
Cryo-EM structure of 311 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

EMDB-27786:
Cryo-EM structure of 334 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

EMDB-27787:
Cryo-EM structure of 337 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

EMDB-27788:
Cryo-EM structure of 356 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

EMDB-27789:
Cryo-EM structure of 364 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

PDB-8dyt:
Cryo-EM structure of 227 Fab in complex with (NPNA)8 peptide
Method: single particle / : Martin GM, Ward AB

PDB-8dyw:
Cryo-EM structure of 239 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

PDB-8dyx:
Cryo-EM structure of 311 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

PDB-8dyy:
Cryo-EM structure of 334 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

PDB-8dz3:
Cryo-EM structure of 337 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

PDB-8dz4:
Cryo-EM structure of 356 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

PDB-8dz5:
Cryo-EM structure of 364 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)
Method: single particle / : Martin GM, Ward AB

EMDB-27779:
Structure of the SARS-CoV-2 spike glycoprotein S2 subunit
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8dya:
Structure of the SARS-CoV-2 spike glycoprotein S2 subunit
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-28558:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-28559:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8erq:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8err:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26522:
SARS-CoV-2 6P Mut7 in complex with K398.25 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26523:
SARS-CoV-1 in complex with K398.25 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26524:
SARS-CoV-2 6P Mut7 in complex with K398.16 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26525:
SARS-CoV-2 6P Mut7 in complex with K398.16 Fab (3 bound)
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26526:
SARS-CoV-1 in complex with K398.16 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26527:
SARS-CoV-2 6P Mut7 in complex with K288.2 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26528:
SARS-CoV-2 6P Mut7 in complex with K398.8 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26529:
SARS-CoV-2 6P Mut7 in complex with K398.8 Fab (2 bound)
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26530:
SARS-CoV-2 6P Mut7 in complex with K398.18 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26531:
SARS-CoV-2 6P Mut7 in complex with K398.18 Fabs (2 bound)
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26532:
SARS-CoV-2 6P Mut7 in complex with K398.22 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26533:
SARS-CoV-2 6P Mut7 in complex with K398.22 Fab (2 bound)
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26534:
SARS-CoV-1 in complex with K398.8 Fab
Method: single particle / : Lee WH, Torres JL, Ward AB

EMDB-26535:
SARS-CoV-1 in complex with K398.8 Fab (2 bound)
Method: single particle / : Lee WH, Torres JL, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more