[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 48 items for (author: weil & pa)

EMDB-18874:
Cofactor-free Tau 4R2N isoform

PDB-8r3t:
Cofactor-free Tau 4R2N isoform

EMDB-41158:
CS2it1p2_F7K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab

EMDB-41180:
Global reconstruction for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab

EMDB-34034:
SARS-CoV-2 BA.2.75 S Trimer (1 RBD Up)

EMDB-34035:
SARS-CoV-2 BA.2.75 S Trimer (3 RBD Down)

EMDB-34036:
pH 5.5 SARS-CoV-2 BA.2.75 S Trimer (1 RBD Up)

EMDB-34037:
SARS-CoV-2 BA.2.75 S Trimer (3 RBD Down)

EMDB-34038:
SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state1)

EMDB-34039:
SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state2)

EMDB-34040:
SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3)

EMDB-34041:
SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (interface)

EMDB-34042:
SARS-CoV-2 BA.2.75 S Trimer in complex with XG2v024

EMDB-34043:
SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state1)

EMDB-34044:
SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state2)

PDB-7yqt:
SARS-CoV-2 BA.2.75 S Trimer (1 RBD Up)

PDB-7yqu:
SARS-CoV-2 BA.2.75 S Trimer (3 RBD Down)

PDB-7yqv:
pH 5.5 SARS-CoV-2 BA.2.75 S Trimer (1 RBD Up)

PDB-7yqw:
SARS-CoV-2 BA.2.75 S Trimer (3 RBD Down)

PDB-7yqx:
SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state1)

PDB-7yqy:
SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state2)

PDB-7yqz:
SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3)

PDB-7yr0:
SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (interface)

PDB-7yr1:
SARS-CoV-2 BA.2.75 S Trimer in complex with XG2v024

PDB-7yr2:
SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state1)

PDB-7yr3:
SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state2)

EMDB-20739:
HIV-1 bNAb 1-18 in complex with BG505 SOSIP.664 and 10-1074

EMDB-20740:
HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074

PDB-6udj:
HIV-1 bNAb 1-18 in complex with BG505 SOSIP.664 and 10-1074

PDB-6udk:
HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074

EMDB-4405:
Helical MyD88 death domain filament

PDB-6i3n:
Helical MyD88 death domain filament

EMDB-10326:
Structure of inactive GID E3 ubiquitin ligase complex

EMDB-10327:
Structure of active GID E3 ubiquitin ligase complex

EMDB-10328:
Structure of GID Scaffold subcomplex

EMDB-10329:
Structure of GID Scaffold subcomplex bound to substrate receptor Gid10

EMDB-10330:
Structure of GID Scaffold Subcomplex bound to substrate receptor Gid4

EMDB-10331:
Structure of endogenous inactive GID E3 ubiquitin ligase complex

EMDB-10332:
Structure of active GID E3 ubiquitin ligase complex with RING domains deletion

EMDB-10333:
Structure of active GID E3 ubiquitin ligase complex minus Gid2 and delta Gid9 RING domain

PDB-6swy:
Structure of active GID E3 ubiquitin ligase complex minus Gid2 and delta Gid9 RING domain

EMDB-7342:
Cryo-EM structure of the Type 1 pilus rod

PDB-6c53:
Cryo-EM structure of the Type 1 pilus rod

EMDB-5175:
Frozen-hydrated map of the yeast general transcription factor TFIID

EMDB-5176:
Frozen hydrated map of the yeast TFIID-TFIIA-Rap1-DNA complex

EMDB-5177:
Frozen hydrated map of the yeast TFIID-TFIIA-Rap1-DNA complex

EMDB-5178:
Frozen hydrated map of the yeast TFIID-TFIIA-DNA complex

EMDB-5026:
Cryo-negative stain structure of the yeast transcription factor TFIID at 20 A resolution

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more