[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 294 items for (author: villa & n)

EMDB-50711:
Consensus 3D map of the Plastid-encoded RNA polymerase from Sinapis Alba
Method: single particle / : Effantin G, Blanvillain R, Cobessi D

EMDB-50718:
Plastid-encoded RNA polymerase of Sinapis Alba - Focused map 1
Method: single particle / : Effantin G, Blanvillain R, Cobessi D

EMDB-50719:
Plastid-encoded RNA polymerase from Sinapis Alba - Focused map 2
Method: single particle / : Effantin G, Blanvillain R, Cobessi D

EMDB-50720:
Plastid-encoded RNA polymerase from Sinapis Alba, focused map 3
Method: single particle / : Effantin G, Blanvillain R, Cobessi D

EMDB-50722:
Plastid-encoded RNA polymerase from Sinapis Alba, focused map 4
Method: single particle / : Effantin G, Blanvillain R, Cobessi D

EMDB-19877:
Cryo-EM structure of the Plastid-encoded RNA polymerase from Sinapis alba
Method: single particle / : Effantin G, Blanvillain R, Cobessi D

PDB-9epc:
Cryo-EM structure of the Plastid-encoded RNA polymerase from Sinapis alba
Method: single particle / : Effantin G, Blanvillain R, Cobessi D

EMDB-45592:
13-pf microtubule from the LRRK2(I2020T) and MLi-2 dataset
Method: subtomogram averaging / : Chen S, Leschziner AE, Villa E

EMDB-45593:
Focused refinement map of WD40:ARM/ANK interface from LRRK2(I2020T) MLi-2 dataset
Method: subtomogram averaging / : Chen S, Leschziner AE, Villa E

EMDB-45594:
Full-length autoinhibited LRRK2(I2020T) co-polymerized with microtubules and MLi-2
Method: subtomogram averaging / : Chen S, Leschziner AE, Villa E

EMDB-45595:
Full-length autoinhibited LRRK2 on microtubules with MLi-2
Method: subtomogram averaging / : Chen S, Leschziner AE, Villa E

EMDB-45596:
Full-length autoinhibited LRRK2 on microtubules with GZD-824
Method: subtomogram averaging / : Chen S, Leschziner AE, Villa E

EMDB-48856:
70S Ribosome of Goslar infected WT E. coli
Method: subtomogram averaging / : Klusch N, Villa E

EMDB-48875:
70S Ribosome of Goslar infected chmA KD E. coli
Method: subtomogram averaging / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-48876:
70S Ribosome of Goslar infected chmA KD E. coli
Method: subtomogram averaging / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49120:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 90 mpi
Method: electron tomography / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49121:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 90 mpi
Method: electron tomography / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49122:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 30 mpi
Method: electron tomography / : Klusch N, Villa E

EMDB-49123:
In situ cryoET of an EPI vesicle in a Goslar infected WT E. coli cell 1 mpi
Method: electron tomography / : Klusch N, Villa E

EMDB-45591:
Autoinhibited full-length LRRK2(I2020T) on microtubules with MLi-2
Method: subtomogram averaging / : Chen S, Villa E, Leschziner AE

PDB-9cho:
Autoinhibited full-length LRRK2(I2020T) on microtubules with MLi-2
Method: subtomogram averaging / : Chen S, Villa E, Leschziner AE

EMDB-19808:
Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8s8k:
Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-45229:
In-cell Toxoplasma gondii nuclear pore complex cytoplasmic ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45230:
In-cell Toxoplasma gondii nuclear pore complex inner ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45231:
In-cell Toxoplasma gondii nuclear pore complex nuclear ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45232:
In-cell Toxoplasma gondii nuclear pore complex membrane focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45233:
In-cell Toxoplasma gondii nuclear pore complex lumenal ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45260:
In-cell Toxoplasma gondii symmetry-expanded nuclear pore complex consensus map
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-19541:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-19801:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-19802:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-19803:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-19804:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-19805:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-19806:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-19807:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8rw1:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8s8d:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8s8e:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8s8f:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8s8g:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8s8h:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8s8i:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

PDB-8s8j:
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)
Method: single particle / : Villamayor-Belinchon L, Sharma P, Llacer JL, Hussain T

EMDB-42457:
Methanosarcine mazei tRNAPyl in A-site of ribosome
Method: single particle / : Krahn N, Zhang J, Melnikov SV, Tharp JM, Villa A, Patel A, Howard RJ, Gabir H, Patel TR, Stetefeld J, Puglisi J, Soll D

PDB-8upy:
Methanosarcine mazei tRNAPyl in A-site of ribosome
Method: single particle / : Krahn N, Zhang J, Melnikov SV, Tharp JM, Villa A, Patel A, Howard RJ, Gabir H, Patel TR, Stetefeld J, Puglisi J, Soll D

EMDB-44372:
In-cell Saccharomyces cerevisiae nuclear pore complex with single nuclear ring
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-44377:
In-cell Saccharomyces cerevisiae nuclear pore complex with double nuclear ring and basket
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-44379:
In-cell Mus musculus nuclear pore complex with nuclear basket
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more