[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 57 items for (author: tripathi & p)

EMDB-44532:
PRMT1 hexamer, Protein Arginine Methyl transferase
Method: single particle / : Nadendla EK, Wang CH

EMDB-44541:
PRMT1-Octamer
Method: single particle / : Nadendla EK, Wang CH

EMDB-44546:
PRMT1-Tetramer
Method: single particle / : Nadendla EK, Wang CH

PDB-9bh4:
PRMT1 hexamer, Protein Arginine Methyl transferase
Method: single particle / : Nadendla EK, Wang CH

PDB-9bhd:
PRMT1-Octamer
Method: single particle / : Nadendla EK, Wang CH

PDB-9bhg:
PRMT1-Tetramer
Method: single particle / : Nadendla EK, Wang CH

EMDB-39814:
PRMT1-Decamer
Method: helical / : EswarKumar N, Wang CH

EMDB-39821:
PRMT1-Filament
Method: single particle / : EswarKumar N, Wang CH

PDB-8z7h:
PRMT1-Decamer
Method: helical / : EswarKumar N, Wang CH

PDB-8z7o:
PRMT1-Filament
Method: single particle / : EswarKumar N, Wang CH

EMDB-39745:
PRMT1-Tetramer
Method: single particle / : EswarKumar N, Wang CH, Ho MC

PDB-8z2z:
PRMT1-Tetramer
Method: single particle / : EswarKumar N, Wang CH, Ho MC

EMDB-18214:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18216:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18217:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused on E2-like density
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18218:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused dimeric core
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18220:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 CPH domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18221:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 DOC domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18222:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 ARM9 domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18223:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 ARIH-RBR element
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-19179:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Prabu JR, Schulman BA

PDB-8q7e:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

PDB-8q7h:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

PDB-8rhz:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-18207:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide, Glacios map
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18230:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18915:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

PDB-8q7r:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

PDB-8r5h:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-29725:
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Morano NC, Shapiro L, Kwong PD

EMDB-29731:
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

PDB-8g4m:
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Morano NC, Shapiro L, Kwong PD

PDB-8g4t:
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

EMDB-28192:
Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(dominant class)
Method: single particle / : Tripathi P, Kwong PD

EMDB-28196:
Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(class 2)
Method: single particle / : Tripathi P, Kwong PD

PDB-8ek1:
Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(dominant class)
Method: single particle / : Tripathi P, Kwong PD

PDB-8eka:
Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(class 2)
Method: single particle / : Tripathi P, Kwong PD

EMDB-16417:
Tomogram of an intracellular Salmonella within a ruptured SCV
Method: electron tomography / : Meijing L

EMDB-16418:
Tomogram of ruptured SCV with early phagophores
Method: electron tomography / : Meijing L

EMDB-16419:
Tomogram of stick-shaped contacts between an extended phagophore and the ER around SCV
Method: electron tomography / : Meijing L

EMDB-16420:
Tomogram of three extended phagophores around SCV
Method: electron tomography / : Meijing L

EMDB-16421:
Tomogram of omegasomes around SCV
Method: electron tomography / : Meijing L

EMDB-16422:
Tomogram of membrane contacts between a dilated phagophore rim and the ER around SCV
Method: electron tomography / : Meijing L

EMDB-27194:
CIS43 Variant 10 bound to pfCSP Class 4
Method: single particle / : Gorman J, Kwong PD

EMDB-27195:
CIS43 Variant 10 bound to pfCSP Class 2
Method: single particle / : Gorman J, Kwong PD

EMDB-27202:
CIS43 Variant 10 bound to pfCSP Class 1
Method: single particle / : Gorman J, Kwong PD

EMDB-27222:
CIS43 Variant 10 bound to pfCSP Class 3
Method: single particle / : Gorman J, Kwong PD

EMDB-21514:
map of the mammalian Mediator complex
Method: single particle / : Zhao H, Young N, Asturias F

PDB-6w1s:
Atomic model of the mammalian Mediator complex
Method: single particle / : Zhao H, Young N, Asturias F

EMDB-20391:
CryoEM structure of mouse mediator subunit one deletion
Method: single particle / : Asturias F, Zhao H, Young N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more