[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,856 items for (author: tong & w)

EMDB-72108:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P, Fischer E

PDB-9q0w:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P

EMDB-54480:
Tomogram of unbudded yeast cell overexpressing Ldm1
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54483:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-61168:
Structure of Chikungunya virus infectious particles, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

PDB-9j6d:
Structure of Chikungunya virus infectious particles, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

EMDB-54486:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor (unbudded region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54487:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor(bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54489:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54497:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-60966:
Cryo-EM structure of chikungunya virus glycoprotein E1-E2 with C34 Fab.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

EMDB-60970:
VLP structure of Chikungunya virus, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

PDB-9ixa:
Cryo-EM structure of chikungunya virus glycoprotein E1-E2 with C34 Fab.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

PDB-9ixi:
VLP structure of Chikungunya virus, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

EMDB-49373:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

EMDB-49405:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1
Method: single particle / : Borst AJ, Weidle C

PDB-9nfu:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

PDB-9nh7:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1.
Method: single particle / : Borst AJ, Weidle C

EMDB-60997:
VLP structure of Chikungunya virus complexed with C34 Fab, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

PDB-9iyi:
VLP structure of Chikungunya virus complexed with C34 Fab, 2f block.
Method: single particle / : Han X, Ji C, Wang F, Tian S, Gao FG, Yan J

EMDB-63885:
The 2:1 map of BAP1/ASXL1-K351Ub in complex with H2AK119Ub nucleosome
Method: single particle / : Ai HS, Liu L

EMDB-62337:
AtGORK 1-623 truncated
Method: single particle / : Chen YH, Li QY, Zhang CR, Tang LH

EMDB-62338:
AtGORK Full length 1
Method: single particle / : Chen YH, Li QY, Zhang CR, Tang LH

EMDB-62339:
AtGORK 1-510 truncated
Method: single particle / : Chen YH, Li QY

PDB-9khe:
AtGORK 1-623 truncated
Method: single particle / : Chen YH, Li QY, Zhang CR, Tang LH

PDB-9khf:
AtGORK Full length 1
Method: single particle / : Chen YH, Li QY, Zhang CR, Tang LH

PDB-9khg:
AtGORK 1-510 truncated
Method: single particle / : Chen YH, Li QY

EMDB-38961:
Structural mechanism of human HCN1 hyperpolarization-activated channel inhibition by ivabradine
Method: single particle / : Che T, Cheng XY

PDB-8y60:
Structural mechanism of human HCN1 hyperpolarization-activated channel inhibition by ivabradine
Method: single particle / : Che T, Cheng XY

EMDB-63458:
Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

PDB-9lws:
Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

EMDB-70808:
Structure of Fab HB420 in complex with influenza H3N2 A/Moscow/10/1999 neuraminidase
Method: single particle / : Lv H, Wu NC

PDB-9osr:
Structure of Fab HB420 in complex with influenza H3N2 A/Moscow/10/1999 neuraminidase
Method: single particle / : Lv H, Wu NC

EMDB-63456:
Cryo-EM structure of PI3Kalpha in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

EMDB-63457:
Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

PDB-9lwq:
Cryo-EM structure of PI3Kalpha in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

PDB-9lwr:
Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

EMDB-62531:
Cryo-EM structure of human ABCC4 (Apo state)
Method: single particle / : Li MH, Wen XP

EMDB-62532:
Cryo-EM structure of human ABCC4 (cAMP-bound)
Method: single particle / : Li MH, Wen XP

EMDB-62533:
Cryo-EM structure of human ABCC4 (MTX-bound)
Method: single particle / : Li MH, Wen XP

EMDB-62534:
Cryo-EM structure of human ABCC4 (PGE2-bound)
Method: single particle / : Li MH, Wen XP

PDB-9krk:
Cryo-EM structure of human ABCC4 (Apo state)
Method: single particle / : Li MH, Wen XP

PDB-9krl:
Cryo-EM structure of human ABCC4 (cAMP-bound)
Method: single particle / : Li MH, Wen XP

PDB-9krm:
Cryo-EM structure of human ABCC4 (MTX-bound)
Method: single particle / : Li MH, Wen XP

PDB-9krn:
Cryo-EM structure of human ABCC4 (PGE2-bound)
Method: single particle / : Li MH, Wen XP

EMDB-46758:
Cryo-EM structure of neutralizing murine antibody WS.HSV-1.24 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-46759:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E.DS
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-46760:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-46761:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-46762:
Cryo-EM structure of gB-Ecto.516P.531E.DS, a prefusion-stabilized HSV-1 glycoprotein B extracellular domain
Method: single particle / : Roark RS, Shapiro L, Kwong PD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more