- EMDB-63884: The 1:1 cryo-EM structure of BAP1/ASXL1-K351Ub in complex with H2... -
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Entry
Database: EMDB / ID: EMD-63884
Title
The 1:1 cryo-EM structure of BAP1/ASXL1-K351Ub in complex with H2AK119Ub nucleosome
Map data
Sample
Complex: The 1:1 cryo-EM structure of BAP1/ASXL1-K351Ub in complex with H2AK119Ub nucleosome
Protein or peptide: Histone H3.2
Protein or peptide: Histone H4
Protein or peptide: Histone H2A type 1-B/E
Protein or peptide: Histone H2B type 1-K
DNA: DNA (147-MER)
DNA: DNA (147-MER)
Protein or peptide: Ubiquitin carboxyl-terminal hydrolase BAP1
Protein or peptide: Ubiquitin
Protein or peptide: Polycomb group protein ASXL1
Keywords
PR-DUB / nucleosome / H2AK119Ub / BAP1 / BAP1/ASXL1 / ASXL1 K351Ub The 2:1 complex of BAP1-ASXL1-K351Ub and H2AK119Ub nucleosome / NUCLEAR PROTEIN/DNA / NUCLEAR PROTEIN-DNA complex
Function / homology
Function and homology information
thrombocyte differentiation / nucleate erythrocyte differentiation / PR-DUB complex / platelet morphogenesis / histone H2A deubiquitinase activity / positive regulation of retinoic acid receptor signaling pathway / macrophage homeostasis / leukocyte proliferation / lung saccule development / podocyte development ...thrombocyte differentiation / nucleate erythrocyte differentiation / PR-DUB complex / platelet morphogenesis / histone H2A deubiquitinase activity / positive regulation of retinoic acid receptor signaling pathway / macrophage homeostasis / leukocyte proliferation / lung saccule development / podocyte development / negative regulation of peroxisome proliferator activated receptor signaling pathway / myeloid cell apoptotic process / neutrophil differentiation / regulation of kidney size / hematopoietic stem cell homeostasis / common myeloid progenitor cell proliferation / monoubiquitinated protein deubiquitination / tissue homeostasis / protein K48-linked deubiquitination / nuclear retinoic acid receptor binding / peroxisome proliferator activated receptor binding / bone marrow development / : / erythrocyte maturation / Formation of the ternary complex, and subsequently, the 43S complex / negative regulation of fat cell differentiation / regulation of cytokine production involved in inflammatory response / Ribosomal scanning and start codon recognition / Translation initiation complex formation / hemopoiesis / SARS-CoV-1 modulates host translation machinery / homeostasis of number of cells / Peptide chain elongation / Selenocysteine synthesis / protein deubiquitination / Formation of a pool of free 40S subunits / Eukaryotic Translation Termination / SRP-dependent cotranslational protein targeting to membrane / Response of EIF2AK4 (GCN2) to amino acid deficiency / response to retinoic acid / Viral mRNA Translation / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / GTP hydrolysis and joining of the 60S ribosomal subunit / L13a-mediated translational silencing of Ceruloplasmin expression / heart morphogenesis / Major pathway of rRNA processing in the nucleolus and cytosol / negative regulation of megakaryocyte differentiation / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / protein localization to CENP-A containing chromatin / Chromatin modifying enzymes / Replacement of protamines by nucleosomes in the male pronucleus / CENP-A containing nucleosome / Packaging Of Telomere Ends / Maturation of protein E / Maturation of protein E / ER Quality Control Compartment (ERQC) / Myoclonic epilepsy of Lafora / FLT3 signaling by CBL mutants / Recognition and association of DNA glycosylase with site containing an affected purine / Cleavage of the damaged purine / Constitutive Signaling by NOTCH1 HD Domain Mutants / IRAK2 mediated activation of TAK1 complex / Prevention of phagosomal-lysosomal fusion / Alpha-protein kinase 1 signaling pathway / Glycogen synthesis / IRAK1 recruits IKK complex / IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation / Endosomal Sorting Complex Required For Transport (ESCRT) / Membrane binding and targetting of GAG proteins / Negative regulation of FLT3 / Regulation of TBK1, IKKε (IKBKE)-mediated activation of IRF3, IRF7 / PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1 / Deposition of new CENPA-containing nucleosomes at the centromere / Regulation of TBK1, IKKε-mediated activation of IRF3, IRF7 upon TLR3 ligation / IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation / NOTCH2 Activation and Transmission of Signal to the Nucleus / TICAM1,TRAF6-dependent induction of TAK1 complex / TICAM1-dependent activation of IRF3/IRF7 / APC/C:Cdc20 mediated degradation of Cyclin B / telomere organization / Regulation of FZD by ubiquitination / Downregulation of ERBB4 signaling / Recognition and association of DNA glycosylase with site containing an affected pyrimidine / Cleavage of the damaged pyrimidine / Interleukin-7 signaling / APC-Cdc20 mediated degradation of Nek2A / p75NTR recruits signalling complexes / cytosolic ribosome / InlA-mediated entry of Listeria monocytogenes into host cells / TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling / RNA Polymerase I Promoter Opening / Regulation of pyruvate metabolism / NF-kB is activated and signals survival / TRAF6-mediated induction of TAK1 complex within TLR4 complex / Downregulation of ERBB2:ERBB3 signaling / Pexophagy / Regulation of innate immune responses to cytosolic DNA / NRIF signals cell death from the nucleus / thymus development / Inhibition of DNA recombination at telomere Similarity search - Function
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