[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,144 items for (author: tong & c)

EMDB-68583:
Cryo EM structure of SARS-COV-2 (BA.4) RBD in complex with THZ937 Fab (local refine)
Method: single particle / : Wang X, Guo F

PDB-22pd:
Cryo EM structure of SARS-COV-2 (BA.4) RBD in complex with THZ937 Fab (local refine)
Method: single particle / : Wang X, Guo F

EMDB-66628:
Structure of the HCoV-229E spike glycoprotein determined by subtomogram averaging
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66645:
Structure of the vesicular stomatitis virus nucleocapsid subbox
Method: subtomogram averaging / : Liu K, Zhang J, Li S

PDB-9x6s:
Structure of Influenza Hemagglutinin (A/Puerto Rico/8/1934)
Method: subtomogram averaging / : Chen Y, Li S

PDB-9x6z:
Structure of the HCoV-229E spike glycoprotein determined by subtomogram averaging
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66624:
Structure of hemagglutinin from influenza A virions determined by sub-tomogram averaging
Method: subtomogram averaging / : Zhang Z, Chen Y

EMDB-76291:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

PDB-12bp:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

EMDB-80301:
Cryo-EM structure of TasH-tigRNA-MM1 dsDNA complex
Method: single particle / : Zhang H, Liu Z

EMDB-80302:
Cryo-EM structure of TasH-tigRNA-MM5 dsDNA complex
Method: single particle / : Zhang H, Liu Z

PDB-25qk:
Cryo-EM structure of TasH-tigRNA-MM1 dsDNA complex
Method: single particle / : Zhang H, Liu Z

PDB-25ql:
Cryo-EM structure of TasH-tigRNA-MM5 dsDNA complex
Method: single particle / : Zhang H, Liu Z

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-66278:
Human TOM-TIM22 supercomplex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66279:
Human TIM22 complex wtih substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66280:
Human TOM complex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66281:
Human TOM complex with substrate Tim22-GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv1:
Human TIM22 complex wtih substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv2:
Human TOM complex with substrate GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

PDB-9wv3:
Human TOM complex with substrate Tim22-GGC1-sfGFP
Method: single particle / : Liu XL, Cai HJ, Li L

EMDB-66002:
Subtomogram averaging of SARS-CoV-2 spike-P17-IgG Gemini structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66003:
Subtomogram averaging of SARS-CoV-2 spike-P17-IgG solo structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66004:
Subtomogram averaging of spike-P17-IgG solo structure on fixed SARS-CoV-2
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66005:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG Gemini structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66006:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG solo structure in 1-RBD-up conformation
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66007:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG solo structure in closed conformation
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66217:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-66218:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-71742:
Epitope editing of CD90 protects hematopoietic stem cells from immunotherapy and enables targeted enrichment for gene therapy
Method: single particle / : Choo S, Radtke S, Rupert PB, Tong AH, Swing K, Repele A, Starrs M, Humphreys T, Darari A, Strong RK, Keim HP

PDB-9pms:
Epitope editing of CD90 protects hematopoietic stem cells from immunotherapy and enables targeted enrichment for gene therapy
Method: single particle / : Choo S, Radtke S, Rupert PB, Tong AH, Swing K, Repele A, Starrs M, Humphreys T, Darari A, Strong RK, Keim HP

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-66586:
Cryo-EM structure of Medicago truncatula GA3-GID1b-DELLA1 ternary complex
Method: single particle / : Wan LH

EMDB-66587:
Cryo-EM structure of quinary complex GA3-MtGID1b-MtDELLA1-SLY1-ASK1
Method: single particle / : Wan LH

EMDB-66588:
Cryo-EM map of Arabidopsis thaliana SLY1-ASK1
Method: single particle / : Wan LH

PDB-9x5f:
Cryo-EM structure of Medicago truncatula GA3-GID1b-DELLA1 ternary complex
Method: single particle / : Wan LH

PDB-9x5g:
Cryo-EM structure of quinary complex GA3-MtGID1b-MtDELLA1-SLY1-ASK1
Method: single particle / : Wan LH

EMDB-65272:
The structure of DmOR67d-DmOrco in the cVA-bound state
Method: single particle / : Wang J, Guo J

EMDB-65274:
The structure of DmOR67d-DmOrco in the VUAA1-bound state
Method: single particle / : Wang J, Guo J

PDB-9vqp:
The structure of DmOR67d-DmOrco in the cVA-bound state
Method: single particle / : Wang J, Guo J

PDB-9vqr:
The structure of DmOR67d-DmOrco in the VUAA1-bound state
Method: single particle / : Wang J, Guo J

EMDB-69803:
Cryo-EM structure of the ligand-free (Apo) GHRHR-Gs complex
Method: single particle / : Wang MW, Hang KN, Qiu Y, Chen XY, Chen YY, Cong ZT, Zhou QT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more