[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,114 items for (author: tan & tt)

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-72520:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72521:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72522:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72523:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5r:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5s:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5t:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5u:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-67574:
Mfa1 type V pilus from P.gingivalis
Method: single particle / : Shibata S, Matsunami H, Wolf M

PDB-21co:
Mfa1 type V pilus from P.gingivalis
Method: single particle / : Shibata S, Matsunami H, Wolf M

EMDB-65878:
Cryo-EM structure of the Mycobacterium abscessus cytochrome bcc:aa3 supercomplex
Method: single particle / : Mathiyazakan V, Gruber G

EMDB-65879:
Cryo-EM structure of the Mycobacterium abscessus cytochrome bcc:aa3 supercomplex in the presence of ND-011458
Method: single particle / : Mathiyazakan V, Gruber G

PDB-9wcx:
Cryo-EM structure of the Mycobacterium abscessus cytochrome bcc:aa3 supercomplex
Method: single particle / : Mathiyazakan V, Gruber G

PDB-9wcy:
Cryo-EM structure of the Mycobacterium abscessus cytochrome bcc:aa3 supercomplex in the presence of ND-011458
Method: single particle / : Mathiyazakan V, Gruber G

EMDB-72462:
Eukaryotic translation initiation factor 2-B in its apo form (active-state) (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72463:
Eukaryotic translation initiation factor 2-B in its apo form (inactive-state) (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72466:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state) (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72467:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (inactive state) (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72468:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to the viral effector AcP10
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72477:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state) bound to the viral effector AcP10 (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72499:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state) asymmetrically bound to the viral effector AcP10 (CASP target)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y3p:
Eukaryotic translation initiation factor 2-B in its apo form (active-state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y3q:
Eukaryotic translation initiation factor 2-B in its apo form (inactive-state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y3t:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y3u:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y3v:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to the viral effector AcP10
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y4b:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state) bound to the viral effector AcP10
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y4w:
Eukaryotic translation initiation factor 2-B (eIF2B) with a truncation in the beta subunit (active-like-state) asymmetrically bound to the viral effector AcP10
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-76733:
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Method: single particle / : Park S, Gharpure A, Ward AB

PDB-12sn:
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Method: single particle / : Park S, Gharpure A, Ward AB

EMDB-63852:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

PDB-9u4o:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

EMDB-70208:
S. aureus YhaM D193A, 4 N-terminal domains, 2 RNA substrates
Method: single particle / : Mattingly JM, Tanquary JR, Dunham CM

EMDB-70886:
S. aureus YhaM D193A hexamer, D3 refinement
Method: single particle / : Mattingly JM, Tanquary JR, Dunham CM

EMDB-73295:
S. aureus YhaM D193A hexamer, 2 NTDs, hairpin RNA substrate
Method: single particle / : Mattingly JM, Tanquary JR, Dunham CM

EMDB-73296:
S. aureus YhaM D193A hexamer, 3 NTDs, hairpin RNA substrate
Method: single particle / : Mattingly JM, Tanquary JR, Dunham CM

PDB-9o7t:
S. aureus YhaM D193A, 4 N-terminal domains, 2 RNA substrates
Method: single particle / : Mattingly JM, Tanquary JR, Dunham CM

PDB-9ov1:
S. aureus YhaM D193A hexamer, D3 refinement
Method: single particle / : Mattingly JM, Tanquary JR, Dunham CM

PDB-9ype:
S. aureus YhaM D193A hexamer, 2 NTDs, hairpin RNA substrate
Method: single particle / : Mattingly JM, Tanquary JR, Dunham CM

PDB-9ypf:
S. aureus YhaM D193A hexamer, 3 NTDs, hairpin RNA substrate
Method: single particle / : Mattingly JM, Tanquary JR, Dunham CM

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

PDB-9tzy:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

EMDB-69219:
TamA complex with TamB DUF490 in lipid nanodisc
Method: single particle / : Adamson LSR, Doyle MT, Grosas AB

EMDB-69220:
TamA complex with TamB DUF490 in detergent micelles.
Method: single particle / : Adamson LSR, Doyle MT, Grosas AB

PDB-23sp:
TamA complex with TamB DUF490 in lipid nanodisc
Method: single particle / : Adamson LSR, Doyle MT, Grosas AB

PDB-23sq:
TamA complex with TamB DUF490 in detergent micelles.
Method: single particle / : Adamson LSR, Doyle MT, Grosas AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more