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Showing all 47 items for (author: takemoto & c)

EMDB-36663:
rat megalin RAP complex
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36664:
rat megalin
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36692:
rat megalin head
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36693:
rat megalin bodyA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36694:
cryo-EM structure of rat megalin bodyB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36695:
Cryo-EM structure of rat megalin wingA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36696:
rat megalin wingB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36697:
Cryo-EM structure of rat megalin leg
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36698:
rat megalin RAP complex head
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36699:
rat megalin RAP complex bodyA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36700:
rat megalin RAP complex bodyB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36701:
rat megalin RAP complex wingA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36702:
rat megalin RAP complex wingB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-36703:
rat megalin RAP complex leg
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jut:
rat megalin RAP complex
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8juu:
rat megalin
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jx8:
rat megalin head
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jx9:
rat megalin bodyA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxa:
cryo-EM structure of rat megalin bodyB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxb:
Cryo-EM structure of rat megalin wingAc
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxc:
rat megalin wingB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxd:
Cryo-EM structure of rat megalin leg
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxe:
rat megalin RAP complex head
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxf:
rat megalin RAP complex bodyA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxg:
rat megalin RAP complex bodyB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxh:
rat megalin RAP complex wingA
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxi:
rat megalin RAP complex wingB
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

PDB-8jxj:
rat megalin RAP complex leg
Method: single particle / : Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Yun-san L, Nagatoshi S, Tsumoto K, Nishizawa T, Kikkawa M, Saito A

EMDB-33409:
Detergent-solubilized E. coli RseP in complex with Fab
Method: single particle / : Hirose M, Aruga R, Hirose T, Katagiri S, Iwasaki K, Kato T, Nogi T

EMDB-33410:
Deterget-solubilized E. coli RseP(L358C) mutant in complex with Fab
Method: single particle / : Aruga R, Hirose M, Hirose T, Katagiri S, Iwasaki K, Kato T, Nogi T

EMDB-30341:
Consensus mutated xCT-CD98hc complex
Method: single particle / : Oda K, Lee Y

PDB-7ccs:
Consensus mutated xCT-CD98hc complex
Method: single particle / : Oda K, Lee Y, Takemoto M, Yamashita K, Nishizawa T, Nureki O

EMDB-30026:
the CD9 and EWI-2 complex
Method: single particle / : Umeda R, Satoh Y, Takemoto M, Nakada-Nakura Y, Liu K, Yokoyama T, Shirouzu M, Iwata S, Nomura N, Sato K, Ikawa M, Nishizawa T, Nureki O

EMDB-30027:
the CD9 and EWI-2 complex attached to an anti-CD9 Fab fragment
Method: single particle / : Umeda R, Satoh Y, Takemoto M, Nakada-Nakura Y, Liu K, Yokoyama T, Shirouzu M, Iwata S, Nomura N, Sato K, Ikawa M, Nishizawa T, Nureki O

EMDB-3662:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T

EMDB-3663:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T

PDB-5no3:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

PDB-5no4:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

EMDB-3661:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
Method: single particle / : Lopez-Alonso JP, Kaminishi T

PDB-5no2:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

PDB-2r1c:
Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

PDB-2r1g:
Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

EMDB-1315:
Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.
Method: single particle / : Connell SR, Wilson DN, Rost M, Schueler M, Giesebrecht J, Dabrowski M, Mielke T, Fucini P, Spahn CMT

PDB-2om7:
Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation Factors
Method: single particle / : Connell SR, Wilson DN, Rost M, Schueler M, Giesebrecht J, Dabrowski M, Mielke T, Fucini P, Spahn CMT

EMDB-1413:
Structural aspects of RbfA action during small ribosomal subunit assembly.
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

PDB-1x18:
Contact sites of ERA GTPase on the THERMUS THERMOPHILUS 30S SUBUNIT
Method: single particle / : Sharma MR, Barat C, Agrawal RK

PDB-1x1l:
Interaction of ERA,a GTPase protein, with the 3'minor domain of the 16S rRNA within the THERMUS THERMOPHILUS 30S subunit.
Method: single particle / : Sharma MR, Barat C, Agrawal RK

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
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External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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