[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 56 items for (author: speck & c)

EMDB-19566:
Human OCCM DNA licensing intermediate
Method: single particle / : Wells JN, Leber V, Edwards LV, Allyjaun S, Peach M, Tomkins J, Kefala-Stavridi A, Faull SV, Aramayo R, Pestana CM, Ranjha L, Speck C

PDB-8rwv:
Human OCCM DNA licensing intermediate
Method: single particle / : Wells JN, Leber V, Edwards LV, Allyjaun S, Peach M, Tomkins J, Kefala-Stavridi A, Faull SV, Aramayo R, Pestana CM, Ranjha L, Speck C

EMDB-44441:
Cryo-EM structure of the S. cerevisiae ORC-Cdc6-Mcm2-7-DNA complex with a fully closed Mcm2-Mcm5 DNA entry gate
Method: single particle / : Yuan Z, Bai L, Li H, Speck C

PDB-9bcx:
Cryo-EM structure of the S. cerevisiae ORC-Cdc6-Mcm2-7-DNA complex with a fully closed Mcm2-Mcm5 DNA entry gate
Method: single particle / : Yuan Z, Bai L, Li H, Speck C

EMDB-13619:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (composite map)
Method: single particle / : Saleh A, Noguchi Y

EMDB-13620:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I (composite map)
Method: single particle / : Saleh A, Noguchi Y

EMDB-13621:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (B1 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13622:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (B2 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13623:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (B3 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13624:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13629:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state II (composite map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13631:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state II (B1 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13635:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state II (B2 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13640:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state II (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13644:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state I (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13645:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I (B1 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13646:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I (B2 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13647:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13648:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13649:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state A (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13650:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state B (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13651:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state C (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13652:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state D (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13653:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state E (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13655:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state F (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13656:
Structure of double-stranded DNA-bound MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATP (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13657:
Structure of double-stranded DNA-bound MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATP (B1 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13658:
Structure of double-stranded DNA-bound MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATP (B2 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13659:
Structure of double-stranded DNA-bound MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATP (B3 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

PDB-7pt6:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

PDB-7pt7:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13453:
Cryo-EM structure of the agonist setmelanotide bound to the activemelanocortin-4 receptor (MC4R) in complex with the heterotrimeric Gs protein at 2.6 A resolution
Method: single particle / : Heyder NA, Schmidt A, Kleinau G, Hilal T, Scheerer P

EMDB-13454:
Active Melanocortin-4 receptor (MC4R)- Gs protein complex bound to agonist NDP-alpha-MSH at 2.86 A resolution.
Method: single particle / : Heyder NA, Schmidt A, Kleinau G, Hilal T, Scheerer P

PDB-7piu:
Cryo-EM structure of the agonist setmelanotide bound to the active melanocortin-4 receptor (MC4R) in complex with the heterotrimeric Gs protein at 2.6 A resolution.
Method: single particle / : Heyder NA, Schmidt A, Kleinau G, Hilal T, Scheerer P

PDB-7piv:
Active Melanocortin-4 receptor (MC4R)- Gs protein complex bound to agonist NDP-alpha-MSH at 2.86 A resolution.
Method: single particle / : Heyder NA, Schmidt A, Kleinau G, Hilal T, Scheerer P

EMDB-23755:
CryoEM map of the structure of the S. cerevisiae origin recognition complex bound to the replication initiator Cdc6 and the ARS1 origin DNA.
Method: single particle / : Feng X, Li H

EMDB-23818:
Cryo-EM 3D map of the S. cerevisiae origin recognition complex bound to Cdc6 and ARS1 origin DNA
Method: single particle / : Feng X, Li H

PDB-7mca:
Structure of the S. cerevisiae origin recognition complex bound to the replication initiator Cdc6 and the ARS1 origin DNA.
Method: single particle / : Feng X, Li H

EMDB-21662:
Cryo-EM map of semi-attached mutant OCCM-DNA complex (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation)
Method: single particle / : Yuan Z, Schneider S

EMDB-21664:
Cryo-EM map of mutant Mcm2-7 hexamer with Mcm6 WHD truncation
Method: single particle / : Yuan Z, Schneider S

EMDB-21665:
Cryo-EM map of pre-insertion mutant OCCM-DNA complex (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation)
Method: single particle / : Yuan Z, Schneider S

EMDB-21666:
Cryo-EM map of the mutant OCCM (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) loaded on DNA at 10.5 A resolution
Method: single particle / : Yuan Z, Schneider S

PDB-6wgc:
Atomic model of semi-attached mutant OCCM-DNA complex (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation)
Method: single particle / : Yuan Z, Schneider S, Dodd T, Riera A, Bai L, Yan C, Magdalou I, Ivanov I, Stillman B, Li H, Speck C

PDB-6wgf:
Atomic model of mutant Mcm2-7 hexamer with Mcm6 WHD truncation
Method: single particle / : Yuan Z, Schneider S, Dodd T, Riera A, Bai L, Yan C, Magdalou I, Ivanov I, Stillman B, Li H, Speck C

PDB-6wgg:
Atomic model of pre-insertion mutant OCCM-DNA complex(ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation)
Method: single particle / : Yuan Z, Schneider S, Dodd T, Riera A, Bai L, Yan C, Magdalou I, Ivanov I, Stillman B, Li H, Speck C

PDB-6wgi:
Atomic model of the mutant OCCM (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation) loaded on DNA at 10.5 A resolution
Method: single particle / : Yuan Z, Schneider S, Dodd T, Riera A, Bai L, Yan C, Magdalou I, Ivanov I, Stillman B, Li H, Speck C

EMDB-9400:
Cryo-EM structure of Mcm2-7 double hexamer on dsDNA
Method: single particle / : Li H, Yuan Z

PDB-5bk4:
Cryo-EM structure of Mcm2-7 double hexamer on dsDNA
Method: single particle / : Li H, Yuan Z, Bai L

PDB-5v8f:
Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1
Method: single particle / : Yuan Z, Riera A, Bai L, Sun J, Spanos C, Chen ZA, Barbon M, Rappsilber J, Stillman B, Speck C, Li H

EMDB-8540:
Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1
Method: single particle / : Yuan Z, Riera A, Bai L, Sun J, Spanos C, Chen ZA, Barbon M, Rappsilber J, Stillman B, Speck C, Li H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more