[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 81 items for (author: southworth & dr)

EMDB-45005:
Paired Helical Filament of tau amyloids found in Down Syndrome individuals
Method: helical / : Tse E, Ghosh U, Condello C, Southworth D

EMDB-45007:
Straight Filament of tau amyloids found in Down Syndrome individuals
Method: helical / : Tse E, Ghosh U, Condello C, Southworth D

EMDB-45008:
Paired Helical Filaments purified from Down Syndrome individual brain tissue applied to graphene oxide antibody affinity grids
Method: helical / : Tse E, Ghosh U, Condello C, Southworth D

EMDB-45009:
Straight Filaments purified from Down Syndrome individual brain tissue applied to graphene oxide antibody affinity grids
Method: helical / : Tse E, Ghosh U, Condello C, Southworth D

EMDB-40969:
Uncrosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

EMDB-40970:
DSBU crosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

EMDB-29813:
mtHsp60 V72I apo
Method: single particle / : Braxton JR, Shao H, Tse E, Gestwicki JE, Southworth DR

EMDB-29814:
mtHsp60 V72I apo focus
Method: single particle / : Braxton JR, Shao H, Tse E, Gestwicki JE, Southworth DR

EMDB-29815:
ATP-bound mtHsp60 V72I
Method: single particle / : Braxton JR, Shao H, Tse E, Gestwicki JE, Southworth DR

EMDB-29816:
ATP-bound mtHsp60 V72I focus
Method: single particle / : Braxton JR, Shao H, Tse E, Gestwicki JE, Southworth DR

EMDB-29817:
ATP- and mtHsp10-bound mtHsp60 V72I
Method: single particle / : Braxton JR, Shao H, Tse E, Gestwicki JE, Southworth DR

EMDB-29818:
ATP- and mtHsp10-bound mtHsp60 V72I focus
Method: single particle / : Braxton JR, Shao H, Tse E, Gestwicki JE, Southworth DR

EMDB-28982:
Cryo-EM structure of p97:UBXD1 closed state
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28983:
Cryo-EM structure of p97:UBXD1 open state (composite)
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28984:
Cryo-EM structure of p97:UBXD1 open state (consensus)
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28985:
Focused map of p97:UBXD1 open state (P1 protomer)
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28986:
Focused map of p97:UBXD1 open state (P6 protomer)
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28987:
Cryo-EM structure of p97:UBXD1 VIM-only state
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28988:
Cryo-EM structure of p97:UBXD1 meta state
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28989:
Cryo-EM structure of p97:UBXD1 para state
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28990:
Cryo-EM structure of p97:UBXD1 PUB-in state
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28991:
Cryo-EM structure of p97:UBXD1 H4-bound state
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-28992:
Cryo-EM structure of p97:UBXD1 lariat mutant
Method: single particle / : Braxton JR, Tucker MR, Tse E, Southworth DR

EMDB-29458:
Alzheimer's disease paired-helical filament in complex with PET tracer GTP-1
Method: helical / : Merz GE, Tse E, Southworth DR

EMDB-26121:
Skd3_ATPyS_FITC-casein Hexamer, AAA+ only
Method: single particle / : Rizo AN

EMDB-26122:
Skd3, hexamer, filtered
Method: single particle / : Rizo AN, Cupo RR

PDB-7ttr:
Skd3_ATPyS_FITC-casein Hexamer, AAA+ only
Method: single particle / : Rizo AN

PDB-7tts:
Skd3, hexamer, filtered
Method: single particle / : Rizo AN, Cupo RR

EMDB-23213:
Cryo-EM structure of Hsp90:FKBP51:p23 closed-state complex
Method: single particle / : Lee K, Thwin AC

EMDB-23214:
Cryo-EM structure of Hsp90:p23 closed-state complex
Method: single particle / : Lee K, Thwin AC

EMDB-23970:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-23971:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msw:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msx:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-21521:
ClpAP Engaged2 State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN

PDB-6w21:
ClpAP Engaged2 State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

EMDB-21519:
ClpAP Engaged1 State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN

EMDB-21520:
ClpAP Disengaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN

EMDB-21523:
ClpA Disengaged State bound to RepA-GFP (Focused Classification)
Method: single particle / : Lopez KL, Rizo AN

EMDB-21524:
ClpA Engaged2 State bound to RepA-GFP (Focused Classification)
Method: single particle / : Lopez KL, Rizo AN

PDB-6w1z:
ClpAP Engaged1 State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

PDB-6w20:
ClpAP Disengaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

PDB-6w23:
ClpA Disengaged State bound to RepA-GFP (Focused Classification)
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

PDB-6w24:
ClpA Engaged2 State bound to RepA-GFP (Focused Classification)
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

EMDB-21522:
ClpA Engaged1 State bound to RepA-GFP (ClpA Focused Refinement)
Method: single particle / : Lopez KL, Rizo AN

PDB-6w22:
ClpA Engaged1 State bound to RepA-GFP (ClpA Focused Refinement)
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

EMDB-20845:
ClpA/ClpP Disengaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AR, Southworth DR

EMDB-20851:
ClpA/ClpP Engaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Southworth DR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more