[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 67 items for (author: sousa & dr)

EMDB-52165:
In vitro grown WT Alpha-Synuclein Fibrils
Method: single particle / : Sicking K, Al-Azzani M, Outeiro TF, Fernandez-Busnadiego R

PDB-9hgr:
In vitro grown WT Alpha-Synuclein Fibrils
Method: single particle / : Sicking K, Al-Azzani M, Outeiro TF, Fernandez-Busnadiego R

EMDB-18948:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

PDB-8r68:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

EMDB-18747:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

EMDB-18750:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

EMDB-18751:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

EMDB-18752:
EcZorAB_WT ZorB PGBDs Local refinement
Method: single particle / : Haidai H, Nicholas MIT

EMDB-18754:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

EMDB-18756:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-18766:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qy7:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

PDB-8qyc:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

PDB-8qyd:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

PDB-8qyh:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

PDB-8qyk:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qyy:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-13978:
S. cerevisiae CMGE nucleating origin DNA melting
Method: single particle / : Lewis JS, Sousa JS, Costa A

EMDB-13988:
S. cerevisiae CMGE dimer nucleating origin DNA melting
Method: single particle / : Lewis JS, Sousa JS, Costa A

EMDB-14439:
S. cerevisiae CMGE dimer nucleating origin DNA melting
Method: single particle / : Lewis JS, Sousa JS

PDB-7qhs:
S. cerevisiae CMGE nucleating origin DNA melting
Method: single particle / : Lewis JS, Sousa JS, Costa A

PDB-7z13:
S. cerevisiae CMGE dimer nucleating origin DNA melting
Method: single particle / : Lewis JS, Sousa JS, Costa A

EMDB-24109:
Inactivated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD

EMDB-24110:
Activated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD

EMDB-25650:
Activated state of 2-APB and CBD-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD

EMDB-25651:
Inactivated state of 2-APB and CBD-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD

PDB-7n0m:
Inactivated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD, Gallo PN, Moiseenkova-Bell VY

PDB-7n0n:
Activated state of 2-APB-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD, Gallo PN, Moiseenkova-Bell VY

PDB-7t37:
Activated state of 2-APB and CBD-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD, Gallo PN, Moiseenkova-Bell VY

PDB-7t38:
Inactivated state of 2-APB and CBD-bound wildtype rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RA, Protopopova AD, Gallo PN, Moiseenkova-Bell VY

EMDB-26390:
SAAV pH 7.4 capsid structure
Method: single particle / : Mietzsch M, McKenna R

EMDB-26391:
SAAV pH 6.0 capsid structure
Method: single particle / : Mietzsch M, McKenna R

EMDB-26392:
SAAV pH 5.5 capsid structure
Method: single particle / : Mietzsch M, McKenna R

EMDB-26393:
SAAV pH 4.0 capsid structure
Method: single particle / : Mietzsch M, McKenna R

EMDB-26394:
The SAAV capsid in complex with 3'SLN
Method: single particle / : Mietzsch M, McKenna R

EMDB-26395:
The SAAV capsid in complex with 6'SLN
Method: single particle / : Mietzsch M, McKenna R

PDB-7u94:
SAAV pH 7.4 capsid structure
Method: single particle / : Mietzsch M, McKenna R

PDB-7u95:
SAAV pH 6.0 capsid structure
Method: single particle / : Mietzsch M, McKenna R

PDB-7u96:
SAAV pH 5.5 capsid structure
Method: single particle / : Mietzsch M, McKenna R

PDB-7u97:
SAAV pH 4.0 capsid structure
Method: single particle / : Mietzsch M, McKenna R

EMDB-24266:
Cryo-EM structure of AAV True Type
Method: single particle / : Bennett AD, McKenna R

PDB-7na6:
Cryo-EM structure of AAV True Type
Method: single particle / : Bennett AD, McKenna R

EMDB-21705:
PL-bound rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

PDB-6wkn:
PL-bound rat TRPV2 in nanodiscs
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more