[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 585 items for (author: simone & c)

EMDB-53252:
Pre-activated 9-subunit COP9 signalosome and neddylated SCF (Skp1-Skp2-Cks1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

EMDB-53254:
Dissociation-state-1 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53255:
Dissociation-state-2 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo0:
Pre-activated 9-subunit COP9 signalosome and neddylated SCF (Skp1-Skp2-Cks1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

PDB-9qo2:
Dissociation-state-1 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo3:
Dissociation-state-2 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53253:
Activated 9-subunit COP9 signalosome and neddylated SCF (SKP1-SKP2-CKS1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

PDB-9qo1:
Activated 9-subunit COP9 signalosome and neddylated SCF (SKP1-SKP2-CKS1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

EMDB-53256:
Dissociation-state-3 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53257:
Dissociation-state-4 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53258:
9-subunit COP9 signalosome complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo4:
Dissociation-state-3 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo5:
Dissociation-state-4 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo6:
9-subunit COP9 signalosome complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-54927:
Structure of the bacterial archaellum from L. aerophila
Method: helical / : Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV

EMDB-54928:
Supercoiling bacterial archaellum filament from L. aerophila
Method: single particle / : Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV

PDB-9sie:
Structure of the bacterial archaellum from L. aerophila
Method: helical / : Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV

PDB-9sii:
Supercoiling bacterial archaellum filament from L. aerophila
Method: single particle / : Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV

EMDB-70277:
The structure of TdfH from Neisseria gonorrhoeae
Method: single particle / : Bera A, Noinaj N

PDB-9oaa:
The structure of TdfH from Neisseria gonorrhoeae
Method: single particle / : Bera A, Noinaj N

EMDB-49949:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49950:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49951:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz3:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz4:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz5:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-52749:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 1)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52750:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 2)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52751:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 3)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52752:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 4)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52753:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 5)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52754:
Cryo-EM structure of Shigella flexneri LptDE in complex with a Bicyclic Peptide binder (Compound 12)
Method: single particle / : Allyjaun S, Dunbar E, Hardwick SW, Chirgadze DY, Hubbard J, van den Berg B, Newman H

EMDB-52755:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 13)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52896:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 16)
Method: single particle / : Allyjaun S, Newman H, Chirgadze DY, Hardwick SW, Hubbard J, van den Berg B, Dunbar E

PDB-9i92:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 1)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i93:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 2)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i94:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 3)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i95:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 4)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i96:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 5)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i97:
Cryo-EM structure of Shigella flexneri LptDE in complex with a Bicyclic Peptide binder (Compound 12)
Method: single particle / : Allyjaun S, Dunbar E, Hardwick SW, Chirgadze DY, Hubbard J, van den Berg B, Newman H

PDB-9i98:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 13)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9q8n:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 16)
Method: single particle / : Allyjaun S, Newman H, Chirgadze DY, Hardwick SW, Hubbard J, van den Berg B, Dunbar E

EMDB-48716:
Human Vault Cage in complex with ADP-ribose
Method: single particle / : Lodwick JE, Zhao M

PDB-9mxj:
Human Vault Cage in complex with ADP-ribose
Method: single particle / : Lodwick JE, Zhao M

EMDB-51913:
[FeS] cluster-loaded SMS complex from M. jannaschii
Method: single particle / : Martinez-Carranza M, Sauguet L

PDB-9h78:
[FeS] cluster-loaded SMS complex from M. jannaschii
Method: single particle / : Martinez-Carranza M, Sauguet L

EMDB-44953:
Human Vault Cage
Method: single particle / : Lodwick JE, Zhao M

EMDB-44954:
Human Vault Cage in complex with NAD+
Method: single particle / : Lodwick JE, Zhao M

EMDB-44955:
Human Vault Cage in complex with PARP4
Method: single particle / : Lodwick JE, Zhao M

EMDB-44957:
Human Vault Cage in complex with PARP4 and NAD+
Method: single particle / : Lodwick JE, Zhao M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more