[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,330 items for (author: simon & r)

EMDB-55103:
CryoEM density of NBEAL2 BEACH protein at secondary structure resolution
Method: single particle / : Mann D, Dahl AK, Sachse C, Simonsen A, Pankiv S

EMDB-55065:
Cryo-EM structure of the Arabidopsis thaliana CAT4 transporter in the outward-open L-ornithine bound state
Method: single particle / : Kolokouris D, Newstead S

PDB-9sp8:
Cryo-EM structure of the Arabidopsis thaliana CAT4 transporter in the outward-open L-ornithine bound state
Method: single particle / : Kolokouris D, Newstead S

EMDB-18469:
Asymmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS2/3 gRNA
Method: single particle / : Javed A, Mata PC, Stockley P

PDB-8qkp:
Asymmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS2/3 gRNA
Method: single particle / : Javed A, Mata PC, Stockley P

EMDB-56097:
gp13 protein from vB_PagS_MED16 bacteriophage
Method: helical / : Sasnauskas G, Tamulaitiene G, Miksys A, Poviloniene S, Casaite V, Meskys R

EMDB-56098:
gp39 protein from Escherichia phage vB_EcoS_NBD2
Method: single particle / : Sasnauskas G, Tamulaitiene G, Poviloniene S, Casaite V, Meskys R

EMDB-56099:
gp39 protein from Escherichia phage vB_EcoS_NBD2, unbent tubule, helix refine consensus map
Method: helical / : Sasnauskas G, Tamulaitiene G, Poviloniene S, Casaite V, Meskys R

EMDB-56100:
gp39 protein from Escherichia phage vB_EcoS_NBD2, unbent tubule, focused map 1
Method: single particle / : Sasnauskas G, Tamulaitiene G, Poviloniene S, Casaite V, Meskys R

EMDB-56101:
gp39 protein from Escherichia phage vB_EcoS_NBD2, unbent tubule, focused map 2
Method: single particle / : Sasnauskas G, Tamulaitiene G, Poviloniene S, Casaite V, Meskys R

EMDB-56103:
gp39 protein from Escherichia phage vB_EcoS_NBD2, unbent tubule
Method: single particle / : Sasnauskas G, Tamulaitiene G, Poviloniene S, Casaite V, Meskys R

PDB-9to0:
gp13 protein from vB_PagS_MED16 bacteriophage
Method: helical / : Sasnauskas G, Tamulaitiene G, Miksys A, Poviloniene S, Casaite V, Meskys R

PDB-9toi:
gp39 protein from Escherichia phage vB_EcoS_NBD2
Method: single particle / : Sasnauskas G, Tamulaitiene G, Poviloniene S, Casaite V, Meskys R

PDB-9toz:
gp39 protein from Escherichia phage vB_EcoS_NBD2, unbent tubule
Method: single particle / : Sasnauskas G, Tamulaitiene G, Poviloniene S, Casaite V, Meskys R

EMDB-54816:
Monomeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

EMDB-54817:
Dimeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

PDB-9sf8:
Monomeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

PDB-9sf9:
Dimeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

EMDB-48771:
Cryo-EM Structure of Apo SeAvs7
Method: single particle / : Zhang J, Feng L

EMDB-48772:
Cryo-EM structure of SeAvs7 MCP EFTu1 monomeric complex
Method: single particle / : Zhang J, Feng L

EMDB-73001:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex
Method: single particle / : Zhang J, Feng L

EMDB-73002:
Cryo-EM structure of SeAvs7 MCP EFTu1 monomeric complex-Map B
Method: single particle / : Zhang J, Feng L

EMDB-73003:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex -Map A
Method: single particle / : Zhang J, Feng L

EMDB-73004:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex-Map E
Method: single particle / : Zhang J, Feng L

EMDB-73005:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex-Map D
Method: single particle / : Zhang J, Feng L

EMDB-73006:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex-Map C
Method: single particle / : Zhang J, Feng L

PDB-9n00:
Cryo-EM Structure of Apo SeAvs7
Method: single particle / : Zhang J, Feng L

PDB-9n01:
Cryo-EM structure of SeAvs7 MCP EFTu1 monomeric complex
Method: single particle / : Zhang J, Feng L

PDB-9yix:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex
Method: single particle / : Zhang J, Feng L

EMDB-73688:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

PDB-9z03:
Cryo-EM structure of VVD-908 NLRP3 complex
Method: single particle / : Bernard SM

EMDB-56538:
Structure of the human two pore domain potassium ion channel TASK-3 L122V mutant (K2P9.1)
Method: single particle / : Hall PR, Rodstrom KEJ, Tucker SJ

PDB-28iz:
Structure of the human two pore domain potassium ion channel TASK-3 L122V mutant (K2P9.1)
Method: single particle / : Hall PR, Rodstrom KEJ, Tucker SJ

EMDB-57240:
Cryo-EM structure of Bacillus subtilis DnaB
Method: single particle / : Campoy RR, Guyet A, Pelliciari S, Murray H, Ilangovan A

PDB-29km:
Cryo-EM structure of Bacillus subtilis DnaB
Method: single particle / : Campoy RR, Guyet A, Pelliciari S, Murray H, Ilangovan A

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G

EMDB-55048:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-55049:
CryoEM structure of NADH:quinone oxidoreductases YjlCD fiber's HMP extremity from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-55050:
CryoEM structure of NADH:quinone oxidoreductases YjlCD fiber's N-terminal extremity from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

PDB-9snk:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-72260:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.047, RP.057 and RP.035
Method: single particle / : Barrett JR, Ward AB

EMDB-72265:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.093, RP.073 and RP.063
Method: single particle / : Barrett JR, Ward AB

EMDB-72294:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.092 and RP.052
Method: single particle / : Barrett JR, Ward AB

PDB-9q69:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.047, RP.057 and RP.035
Method: single particle / : Barrett JR, Ward AB

PDB-9q6b:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.093, RP.073 and RP.063
Method: single particle / : Barrett JR, Ward AB

PDB-9q7c:
Cryo-electron microscopy structure of PfRIPR bound to monoclonal antibodies RP.092 and RP.052
Method: single particle / : Barrett JR, Ward AB

EMDB-76733:
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Method: single particle / : Park S, Gharpure A, Ward AB

PDB-12sn:
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Method: single particle / : Park S, Gharpure A, Ward AB

EMDB-56607:
CryoEM structure of guanidinase from Nitrospira inopinata
Method: single particle / : Prokhorova I, Lecomte L, Papp G, Schreiner C, Djinovic-Carugo K

EMDB-56821:
C.t. INO80 chromatin remodeler bound to nucleosome
Method: single particle / : Lecomte L, Grozavu DM, Kolesnikova O, Eustermann S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more