[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,177 items for (author: simon & r)

EMDB-53132:
Rubisco subtomogram average from chloroplasts of two weeks old Physcomitrium patens protonemata cells.
Method: subtomogram averaging / : Poege M, Dickmanns M, Xu P, Li M, Schioetz OH, Kaiser COJ, Ma J, Bieber A, Capitanio C, Brenner JA, Riggi M, Miras M, Kazemein Jasemi NS, Schulze SX, Simon R, Frommer WB, Plitzko JM, Baumeister W

EMDB-53134:
Cryo-electron tomograms of Arabidopsis thaliana embryos.
Method: electron tomography / : Poege M, Dickmanns M, Xu P, Li M, Schioetz OH, Kaiser COJ, Ma J, Bieber A, Capitanio C, Brenner JA, Riggi M, Miras M, Kazemein Jasemi NS, Schulze SX, Simon R, Frommer WB, Plitzko JM, Baumeister W

EMDB-53136:
Cryo-electron tomograms of Limonium bicolor salt gland.
Method: electron tomography / : Poege M, Dickmanns M, Xu P, Li M, Schioetz OH, Kaiser COJ, Ma J, Bieber A, Capitanio C, Brenner JA, Riggi M, Miras M, Kazemein Jasemi NS, Schulze SX, Simon R, Frommer WB, Plitzko JM, Baumeister W

EMDB-53142:
Cryo-electron tomograms of Physcomitrium patens phyllids.
Method: electron tomography / : Poege M, Dickmanns M, Xu P, Li M, Schioetz OH, Kaiser COJ, Ma J, Bieber A, Capitanio C, Brenner JA, Riggi M, Miras M, Kazemein Jasemi NS, Schulze SX, Simon R, Frommer WB, Plitzko JM, Baumeister W

EMDB-56697:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens protonema tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57163:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens gametophore leaflet tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57164:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens protonema tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57165:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens gametophore leaflet tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57166:
Cryo-ET of a plasmodesma in GHL17 Physcomitrium patens protonema tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57167:
Cryo-ET of a plasmodesma in GHL17 Physcomitrium patens protonema tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57168:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens protonema tissue treated with abscisic acid
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57169:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens protonema tissue treated with abscisic acid
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-56294:
Plasmodium falciparum gametocyte microtubule with 15 protofilaments determined in situ
Method: subtomogram averaging / : Ferreira JL

EMDB-53571:
13 protofilament P. falciparum paclitaxel stabilised GDP microtubule
Method: helical / : Bangera M, Moores CA

EMDB-53572:
15 protofilament P. falciparum GMPCPP microtubule
Method: helical / : Bangera M, Moores CA

PDB-9r4x:
13 protofilament P. falciparum paclitaxel stabilised GDP microtubule
Method: helical / : Bangera M, Moores CA

PDB-9r4y:
15 protofilament P. falciparum GMPCPP microtubule
Method: helical / : Bangera M, Moores CA

EMDB-73884:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Method: single particle / : Park S, Ward AB

EMDB-74737:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Method: single particle / : Park S, Ward AB

EMDB-74738:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Method: single particle / : Park S, Ward AB

EMDB-74739:
SARS-CoV-2 S2 in complex with COV2-2509
Method: single particle / : Park S, Ward AB

EMDB-74740:
Stabilized SARS-CoV-2 S2 apo
Method: single particle / : Park S, Ward AB

EMDB-75193:
SARS-CoV-2 spike S2 subunit in complex with polyclonal Fabs (Apex-A epitope)
Method: single particle / : Park S, Ward AB

EMDB-75194:
SARS-CoV-2 spike S2 subunit in complex with polyclonal Fabs (Apex-B epitope)
Method: single particle / : Park S, Ward AB

EMDB-75295:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor2
Method: single particle / : Park S, Ward AB

PDB-10mu:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor2
Method: single particle / : Park S, Ward AB

PDB-9z80:
SARS-CoV-2 S2 in complex with polyclonal Fab_Donor1
Method: single particle / : Park S, Ward AB

PDB-9zt5:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor3
Method: single particle / : Park S, Ward AB

PDB-9zt6:
SARS-CoV-2 S2 in complex with polyclonal Fab-B_Donor8
Method: single particle / : Park S, Ward AB

PDB-9zt7:
SARS-CoV-2 S2 in complex with COV2-2509
Method: single particle / : Park S, Ward AB

PDB-9zt8:
Stabilized SARS-CoV-2 S2 apo
Method: single particle / : Park S, Ward AB

EMDB-75185:
Rhesus rotavirus (consensus structure at 4.7 Angstrom resolution from cryo-ET)
Method: subtomogram averaging / : de Sautu M, Leistner C, Kirchhausen T, Jenni S, Harrison SC

PDB-10ic:
Rhesus rotavirus (consensus structure at 4.7 Angstrom resolution from cryo-ET)
Method: subtomogram averaging / : de Sautu M, Leistner C, Kirchhausen T, Jenni S, Harrison SC

EMDB-71798:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-71799:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-71800:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr5:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr6:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr7:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-70223:
Cryo-EM structure of primidone-bound rabbit TRPM3 having 2 resting and 2 activated subunits (ortho position) at 18 degrees Celsius
Method: single particle / : Kumar S, Lu W, Du J

PDB-9o8d:
Cryo-EM structure of primidone-bound rabbit TRPM3 having 2 resting and 2 activated subunits (ortho position) at 18 degrees Celsius
Method: single particle / : Kumar S, Lu W, Du J

EMDB-56238:
In situ cryo-ET subtomogram averaged map of Flotillin complex
Method: subtomogram averaging / : Li D, Lizarrondo J, Wilfling F

EMDB-56295:
In situ cryo-ET tomogram of a lysosomal structure in untreated HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56296:
In situ cryo-ET tomogram of lysosome damaged by LLOMe (0.5mM, 60min) in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56297:
In situ cryo-ET of lysosome damaged by LLOMe (0.5mM, 60min) encapsulated in an autophagosome in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56298:
In situ cryo-ET tomogram of lysosomes in BAPTA AM pre-treated (50uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56300:
In situ cryo-ET tomogram of lysosomes in LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56327:
In situ cryo-ET tomogram of lysosomal structure in untreated rat hippocampal neurons
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-56329:
In situ cryo-ET tomogram of lysosomes in E64d pre-treated (20uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56330:
In situ cryo-ET tomogram of lysosomal structure in LLOMe-treated (0.5mM, 1h) rat hippocampal neuron.
Method: electron tomography / : Li D, Schwarz A, Wilfling F

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more