[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 106 items for (author: sieber & h)

EMDB-51375:
BCL7A and BAF47 in a nucleosome bound state
Method: single particle / : Martin F, Bergamin E

EMDB-51376:
BCL7A and BAF47 in a nucleosome bound state
Method: single particle / : Martin F, Bergamin E

EMDB-52975:
Structure of the nucleosome-bound human BCL7A
Method: single particle / : Martin F, Bergamin E

PDB-9qaj:
Structure of the nucleosome-bound human BCL7A
Method: single particle / : Martin F, Bergamin E

EMDB-15616:
Four subunit cytochrome b-c1 complex from Rhodobacter sphaeroides in native nanodiscs - consensus refinement in the b-b conformation
Method: single particle / : Swainsbury DJK, Hawkings FR, Martin EC, Musial S, Salisbury JH, Jackson PJ, Farmer DA, Johnson MP, Siebert CA, Hitchcock A, Hunter CN

EMDB-15617:
Four subunit cytochrome b-c1 complex from Rhodobacter sphaeroides in native nanodiscs - focussed refinement in the b-c conformation
Method: single particle / : Swainsbury DJK, Hawkings FR, Martin EC, Musial S, Salisbury JH, Jackson PJ, Farmer DA, Johnson MP, Siebert CA, Hitchcock A, Hunter CN

PDB-8asi:
Four subunit cytochrome b-c1 complex from Rhodobacter sphaeroides in native nanodiscs - consensus refinement in the b-b conformation
Method: single particle / : Swainsbury DJK, Hawkings FR, Martin EC, Musial S, Salisbury JH, Jackson PJ, Farmer DA, Johnson MP, Siebert CA, Hitchcock A, Hunter CN

PDB-8asj:
Four subunit cytochrome b-c1 complex from Rhodobacter sphaeroides in native nanodiscs - focussed refinement in the b-c conformation
Method: single particle / : Swainsbury DJK, Hawkings FR, Martin EC, Musial S, Salisbury JH, Jackson PJ, Farmer DA, Johnson MP, Siebert CA, Hitchcock A, Hunter CN

EMDB-27070:
apo form Cryo-EM structure of Campylobacter jejune ketol-acid reductoisommerase crosslinked by Glutaraldehyde
Method: single particle / : Zheng S, Guddat LW

EMDB-14224:
2.8 Angstrom cryo-EM structure of the dimeric cytochrome b6f-PetP complex from Synechocystis sp. PCC 6803 with natively bound lipids and plastoquinone molecules
Method: single particle / : Farmer DF, Proctor MS, Malone LA, Swainsbury DPK, Hawkings FR, Hitchcock A, Johnson MP

EMDB-15017:
3.15 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Synechocystis sp. PCC 6803 with natively bound plastoquinone and lipid molecules.
Method: single particle / : Malone LA, Procter MS, Farmer DF, Swainsbury DJK, Hawkings FR, Pastorelli F, Emrich-Mills TZ, Siebert A, Hunter CN, Hitchcock A, Johnson MP

PDB-7r0w:
2.8 Angstrom cryo-EM structure of the dimeric cytochrome b6f-PetP complex from Synechocystis sp. PCC 6803 with natively bound lipids and plastoquinone molecules
Method: single particle / : Farmer DF, Proctor MS, Malone LA, Swainsbury DPK, Hawkings FR, Hitchcock A, Johnson MP

PDB-7zxy:
3.15 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Synechocystis sp. PCC 6803 with natively bound plastoquinone and lipid molecules.
Method: single particle / : Malone LA, Procter MS, Farmer DF, Swainsbury DJK, Hawkings FR, Pastorelli F, Emrich-Mills TZ, Siebert A, Hunter CN, Hitchcock A, Johnson MP

EMDB-14332:
1.58 A STRUCTURE OF HUMAN APOFERRITIN OBTAINED FROM TITAN KRIOS 2 AT eBIC, DLS UNDER COMMISSIONING SESSION CM26464-2
Method: single particle / : Clare DK

PDB-7r5o:
1.58 A STRUCTURE OF HUMAN APOFERRITIN OBTAINED FROM TITAN KRIOS 2 AT eBIC, DLS UNDER COMMISSIONING SESSION CM26464-2
Method: single particle / : Clare DK

EMDB-31081:
Subtomogram average of a meiotic triple helix from a pachytene S. cerevisiae cell.
Method: subtomogram averaging / : Ma OX, Chong W, Lee JKE, Cai S, Siebert CA, Howe A, Zhang P, Shi J, Surana U, Gan L

EMDB-12679:
Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4 A
Method: single particle / : Qian P, Koblizek M

EMDB-12680:
Cryo-EM structure (model_2a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.5 A
Method: single particle / : Qian P, Koblizek M

EMDB-12681:
Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at 2.47 A
Method: single particle / : Qian P, Koblizek M

EMDB-12682:
Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at 2.44 A
Method: single particle / : Qian P, Koblizek M

PDB-7o0u:
Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4 A
Method: single particle / : Qian P, Koblizek M

PDB-7o0v:
Cryo-EM structure (model_2a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.5 A
Method: single particle / : Qian P, Koblizek M

PDB-7o0w:
Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at 2.47 A
Method: single particle / : Qian P, Koblizek M

PDB-7o0x:
Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at 2.44 A
Method: single particle / : Qian P, Koblizek M

EMDB-12274:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12275:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-88 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12276:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-150 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12277:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12278:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-316 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12279:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-384 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12280:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12281:
EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y

EMDB-12282:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-253H165L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12283:
EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-159
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12284:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-159
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd3:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd4:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-88 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd5:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-150 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd6:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd7:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-316 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd8:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-384 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd9:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nda:
EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7ndb:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-253H165L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7ndc:
EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-159
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7ndd:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-159
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-10316:
Hepatitis B virus core protein virus-like particle displaying the antigen: extra cellular adhesion domain NadA from Neisseria meningitidis.
Method: single particle / : Collins RF, Roseman AM, Derrick JP

PDB-6tik:
Hepatitis B virus core shell--virus-like particle with NadA epitope
Method: single particle / : Roseman AM, Colllins RF, Derrick JP

EMDB-10162:
Cryo-EM structure of the ClpXP1/2 protein degradation machinery
Method: single particle / : Gatsogiannis C, Merino F, Raunser S

PDB-6sfw:
Cryo-EM Structure of the ClpX component of the ClpXP1/2 degradation machinery.
Method: single particle / : Gatsogiannis C, Merino F, Raunser S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more