[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 88 items for (author: siborova & m)

EMDB-52446:
RSV-F postfusion trimer with no 131-2a bound
Method: single particle / : Snijder J

EMDB-52447:
RSV-F postfusion trimer with one 131-2a Fab bound
Method: single particle / : Snijder J

EMDB-52448:
RSV-F postfusion trimer with two 131-2a Fabs bound
Method: single particle / : Snijder J

EMDB-50093:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the pre-contraction state - tube and sheath proteins
Method: single particle / : Binovsky J, Siborova M, Skubnik K, Novacek J, Plevka P

EMDB-50094:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - sheath proteins
Method: single particle / : Binovsky J, Siborova M, Skubnik K, Novacek J, Plevka P

EMDB-50095:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - tube proteins
Method: single particle / : Binovsky J, Siborova M, Plevka P

PDB-9f04:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the pre-contraction state - tube and sheath proteins
Method: single particle / : Binovsky J, Siborova M, Skubnik K, Novacek J, Plevka P

PDB-9f05:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - sheath proteins
Method: single particle / : Binovsky J, Siborova M, Skubnik K, Novacek J, Plevka P

PDB-9f06:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 tail in the post-contraction state - tube proteins
Method: single particle / : Binovsky J, Siborova M, Plevka P

EMDB-19968:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - complete
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, Benesik M, van Raaij MJ, Plevka P

EMDB-19969:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - core, wedge module, and proximal tail proteins
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

EMDB-19970:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - core, and wedge module proteins
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

EMDB-19971:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the post-contraction state - complete
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

EMDB-19972:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the post-contraction state - sheath initiator, wedge module, inner tripod, arm segment, and proximal tail sheath proteins
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

EMDB-19973:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the post-contraction state - sheath initiator, wedge module, and inner tripod proteins
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

PDB-9euf:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - complete
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, Benesik M, van Raaij MJ, Plevka P

PDB-9eug:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - core, wedge module, and proximal tail proteins
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

PDB-9euh:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - core, and wedge module proteins
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

PDB-9eui:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the post-contraction state - complete
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

PDB-9euj:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the post-contraction state - sheath initiator, wedge module, inner tripod, arm segment, and proximal tail sheath proteins
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

PDB-9euk:
Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the post-contraction state - sheath initiator, wedge module, and inner tripod proteins
Method: single particle / : Binovsky J, Siborova M, Baska R, Pichel-Beleiro A, Skubnik K, Novacek J, van Raaij MJ, Plevka P

EMDB-52444:
Respiratory Syncytial Virus Fusion protein in the postfusion conformation in complex with monoclonal antibody 131-2a Fab
Method: single particle / : Snijder J

EMDB-18949:
Neck and tail of phage 812 virion (composite)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18912:
Neck-tail junction of phage 812 virion (C6)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18919:
Consensus density for neck and tail of phage 812 virion (C6)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18516:
Tail channel of phage 812 virion (C1)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18489:
Tail channel of phage 812 virion (C3)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18445:
Neck of phage 812 virion (C12)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18462:
Neck of phage 812 virion (C6)
Method: single particle / : Cienikova Z, Novacek J, Fuzik T, Benesik M, Plevka P

EMDB-18395:
Portal and anchor DNA of phage 812 after tail contraction (C1)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18412:
Neck of phage 812 after complete genome ejection (C12)
Method: single particle / : Cienikova Z, Bardy P, Fuzik T, Plevka P

EMDB-18369:
Neck and tail of phage 812 after tail contraction (composite)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18372:
Neck channel of phage 812 after tail contraction (C1)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18385:
Consensus density for neck and tail of phage 812 after tail contraction (C6)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

PDB-8qek:
Neck and tail of phage 812 after tail contraction (composite)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

PDB-8qem:
Neck channel of phage 812 after tail contraction (C1)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18213:
Neck of phage 812 after tail contraction (C12)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

PDB-8q7d:
Neck of phage 812 after tail contraction (C12)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18065:
Neck-tail junction of phage 812 after tail contraction (C6)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

PDB-8q1i:
Neck-tail junction of phage 812 after tail contraction (C6)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-18048:
Neck of phage 812 after tail contraction (C6)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

PDB-8q01:
Neck of phage 812 after tail contraction (C6)
Method: single particle / : Cienikova Z, Siborova M, Fuzik T, Plevka P

EMDB-14492:
Bacteriophage SU10 virion (C1)
Method: single particle / : Siborova M, Fuzik T, Prochazkova M, Novacek J, Plevka P

PDB-7z4b:
Bacteriophage SU10 virion (C1)
Method: single particle / : Siborova M, Fuzik T, Prochazkova M, Novacek J, Plevka P

EMDB-14488:
The capsid of bacteriophage SU10.
Method: single particle / : Siborova M, Fuzik T, Prochazkova M, Novacek J, Plevka P

PDB-7z49:
The capsid of bacteriophage SU10.
Method: single particle / : Siborova M, Fuzik T, Prochazkova M, Novacek J, Plevka P

EMDB-14484:
Central part (C10) of bacteriophage SU10 capsid
Method: single particle / : Siborova M, Fuzik T, Prochazkova M, Novacek J, Plevka P

EMDB-14485:
Top part (C5) of bacteriophage SU10 capsid
Method: single particle / : Siborova M, Fuzik T, Prochazkova M, Novacek J, Plevka P

PDB-7z45:
Central part (C10) of bacteriophage SU10 capsid
Method: single particle / : Siborova M, Fuzik T, Prochazkova M, Novacek J, Plevka P

PDB-7z46:
Top part (C5) of bacteriophage SU10 capsid
Method: single particle / : Siborova M, Fuzik T, Prochazkova M, Novacek J, Plevka P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more