[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,506 items for (author: shin & b)

EMDB-53204:
Cryo-EM structure of CDK2-cyclin A bound to OTS964
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

EMDB-53205:
Cryo-EM structure of the human CAK bound to OTS964
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

EMDB-53221:
Cryo-EM structure of the CDK11B-cyclin L2-SAP30BP bound to OTS964 (conformation 1)
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

EMDB-53224:
Cryo-EM structure of CDK11B-cyclin L2-SAP30BP bound to AMP-PNP
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

PDB-9qjj:
Cryo-EM structure of CDK2-cyclin A bound to OTS964
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

PDB-9qjn:
Cryo-EM structure of the human CAK bound to OTS964
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

PDB-9qkt:
Cryo-EM structure of the CDK11B-cyclin L2-SAP30BP bound to OTS964 (conformation 1)
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

PDB-9qkz:
Cryo-EM structure of CDK11B-cyclin L2-SAP30BP bound to AMP-PNP
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

PDB-9ql1:
Cryo-EM structure of the CDK11B-cyclin L2-SAP30BP bound to OTS964 (conformation 2)
Method: single particle / : McGeoch AJS, Cushing VI, Cronin NB, Alfieri C, Greber BJ

EMDB-66181:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

PDB-9wqv:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-62911:
Cryo-EM structure of apo GPR50 with BRIL fusion, anti-BRIL Fab, and anti-Fab Nb complex
Method: single particle / : Shin J, Cho Y

PDB-9l9o:
Cryo-EM structure of apo GPR50 with BRIL fusion, anti-BRIL Fab, and anti-Fab Nb complex
Method: single particle / : Shin J, Cho Y

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-72552:
attLsym bound serine integrase complex in the dimeric state
Method: single particle / : Shin H, Pigli Y, Pena Reyes T, Fuller JR, Olorunniji FJ, Rice PA

EMDB-72632:
attPsym bound large serine integrase and RDF complex in the dimeric state
Method: single particle / : Shin H, Olorunniji FJ, Rice PA

PDB-9y66:
attLsym bound serine integrase complex in the dimeric state
Method: single particle / : Shin H, Pigli Y, Pena Reyes T, Fuller JR, Olorunniji FJ, Rice PA

PDB-9y6v:
attPsym bound large serine integrase and RDF complex in the dimeric state
Method: single particle / : Shin H, Olorunniji FJ, Rice PA

EMDB-61148:
Cryo-EM structure of TrhO from B. subtilis complexed with tRNA Ala
Method: single particle / : Shin K, Kim J

PDB-9j5o:
Cryo-EM structure of TrhO from B. subtilis complexed with tRNA Ala
Method: single particle / : Shin K, Kim J

EMDB-66326:
Tomogram of doublet microtubules with bound dynein-2 molecules
Method: electron tomography / : He HK, Chen X, Lv QH, Ichikawa M

EMDB-62386:
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62453:
Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62454:
Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62535:
Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62671:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62679:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kkf:
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kn5:
Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kn6:
Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9krp:
Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kzu:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kzx:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62427:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

PDB-9kmc:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

EMDB-66460:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

PDB-9x1h:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

EMDB-47731:
(Apo)Alpha-synuclein fibril structures from MSA patient brain
Method: helical / : Lu J, Sawaya MR, Ge P, Boyer DR, Eisenberg DS

EMDB-47732:
Complex fibril structure of MSA alpha-synuclein with CNS-11g at 4 hours
Method: helical / : Lu J, Sawaya MR, Ge P, Boyer DR, Eisenberg DS

EMDB-47733:
Complex fibril structure of MSA alpha-synuclein with CNS-11g at 6 hours
Method: helical / : Lu J, Sawaya MR, Ge P, Boyer DR, Eisenberg DS

EMDB-47734:
Complex fibril structure of MSA alpha-synuclein with CNS-11g at 10 hours
Method: helical / : Lu J, Sawaya MR, Ge P, Boyer DR, Eisenberg DS

EMDB-47735:
Complex fibril structure of MSA alpha-synuclein with CNS-11g at 15 hours
Method: helical / : Lu J, Sawaya MR, Ge P, Boyer DR, Eisenberg DS

EMDB-47736:
CNS-11g alone fibril
Method: helical / : Lu J, Sawaya MR

EMDB-52456:
Amyloid fibril of TTR
Method: helical / : Aibara S, Kassner E, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, Oliveira TM

EMDB-52457:
Amyloid fibril of apolipoprotein A-IV
Method: helical / : Aibara S, Kassner A, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, Oliveira TM

PDB-9hx3:
Amyloid fibril of TTR
Method: helical / : Aibara S, Kassner E, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, Oliveira TM

PDB-9hx4:
Amyloid fibril of apolipoprotein A-IV
Method: helical / : Aibara S, Kassner A, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, Oliveira TM

EMDB-62800:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with Ace2 constituent map 1
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-62810:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2 constituent map 2
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more