[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: shi & jx)

EMDB-62143:
SARS-CoV-2 related bat coronavirus BANAL-52 spike in the locked state
Method: single particle / : Li QQ, Cai X, Li XN, Zhang YB, Li R, Kang ZR, Wan DD, Wang JX, Yang JX, Shi JX, Jin SL, Peng Y, Zang N, Xie ZK, Wan YS, Shang J

EMDB-38008:
Cryo-EM structure of H5 hemagglutinin from human-infecting H5N8 influenza virus in complex with Sialyl-Lewis X
Method: single particle / : Jin XY, Han P, Song H, Qi JX

EMDB-37532:
Structure of hemagglutinin from Asiatic toad influenza-like virus
Method: single particle / : Zhang D, Xie YF, Chai Y, Shi Y, Liu WJ, Qi JX, Gao GF, Gao F

EMDB-62196:
MPXV DNA polymerase in complex with primer/5U template DNA
Method: single particle / : Xie YF, Kuai L, Peng Q, Wang Q, Wang H, Li XM, Qi JX, Ding Q, Shi Y, Gao F

EMDB-62197:
MPXV DNA polymerase in complex with primer/4U template DNA
Method: single particle / : Xie YF, Kuai L, Peng Q, Wang Q, Wang H, Li XM, Qi JX, Ding Q, Shi Y, Gao F

EMDB-62198:
MPXV DNA polymerase in complex with CDV
Method: single particle / : Xie YF, Kuai L, Peng Q, Wang Q, Wang H, Li XM, Qi JX, Ding Q, Shi Y, Gao F

EMDB-62200:
MPXV DNA polymerase complex in editing state 2
Method: single particle / : Xie YF, Kuai L, Peng Q, Wang Q, Wang H, Li XM, Qi JX, Ding Q, Shi Y, Gao F

EMDB-62199:
MPXV DNA polymerase complex in editing state 1
Method: single particle / : Xie YF, Kuai L, Peng Q, Wang Q, Wang H, Li XM, Qi JX, Ding Q, Shi Y, Gao F

EMDB-39208:
Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with raccoon dog ACE2 (local refinement)
Method: single particle / : Li LJ, Luo CL, Qi JX, Gao GF

EMDB-39229:
Cryo-EM structure of SARS-CoV-2 alpha variant spike protein in complex with raccoon dog ACE2 (local refinement)
Method: single particle / : Li LJ, Luo CL, Qi JX, Gao GF

EMDB-39209:
Cryo-EM structure of SARS-CoV-2 prototype spike protein in complex with raccoon dog ACE2
Method: single particle / : Li LJ, Luo CL, Qi JX, Gao GF

EMDB-39224:
Cryo-EM map of SARS-CoV-2 alpha variant spike protein in complex with raccoon dog ACE2
Method: single particle / : Li LJ, Luo CL, Qi JX, Gao GF

EMDB-61053:
cryo-EM structure of human cystic fibrosis transmembrane conductance regulator (CFTR) from Biortus
Method: single particle / : Cao S, Shi H, Yang YH, Li JX, Hu YF

EMDB-37711:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 RBD in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-38460:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 spike protein(6P), 1-RBD-up state
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38463:
Cryo-EM structure of SARS-CoV-2 Omicron EG.5 spike protein(6P), RBD-closed state
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38476:
Cryo-EM structure of SARS-CoV-2 Omicron HV.1 spike protein(6P), RBD-closed state
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38488:
Cryo-EM structure of SARS-CoV-2 Omicron EG.5.1 spike protein(6P), RBD-closed state
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38495:
SARS-CoV-2 Omicron EG.5.1 RBD in complex with human ACE2 (local refined from the spike protein)
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38496:
SARS-CoV-2 Omicron HV.1 RBD in complex with human ACE2 (local refinement from the spike protein)
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38498:
Cryo-EM structure of SARS-CoV-2 Omicron EG.5.1 spike protein(6P) in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38502:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 spike protein(6P) in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38505:
Cryo-EM structure of SARS-CoV-2 Omicron HV.1 spike protein(6P) in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38826:
Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-38827:
Cryo-EM structure of SARS-CoV-2 Omicron JN.1 RBD in complex with human ACE2 (local refinement from the spike protein)
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-38937:
Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-38983:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 RBD in complex with human ACE2 and S309 Fab
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-39012:
Representative tomogram of primary glioblastoma stem cell with circular inter-mitochondrial junctions.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39015:
Representative tomogram of microglia cell with nanotunnel-like structures resembling mitochondrial fission.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39019:
Representative tomogram of glioblastoma cell with nanotunnel-like structure and inter-mitochondrial junction.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39021:
Representative tomogram of normal human astrocyte with nanotunnel-like structure which is an extension of the mitochondrial outer membrane.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39023:
Representative tomogram of primary glioblastoma differentiated cell with parallel inter-mitochondrial junction.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39024:
Representative tomogram of primary glioblastoma stem cell with clustered mitochondria bearing various long-short axis ratios.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-36057:
Cryo-EM map of DAM (a newly designed immunogen for monkeypox virus) in complex with half of the antigen-binding fragment (Fab) of A27D7 and the single-chain fragment variable (scFv) of 7D11
Method: single particle / : Wang H, Yin P, Zheng TT, Han P, Qi JX

EMDB-36056:
Cryo-EM map of half of DAM (the A35 part) in complex with the antigen-binding fragment (Fab) of A27D7
Method: single particle / : Wang H, Yin P, Zheng TT, Qin LJ, Han P, Qi JX

EMDB-34731:
The structure of MPXV polymerase holoenzyme in replicating state
Method: single particle / : Peng Q, Xie YF, Kuai L, Wang H, Qi JX, Gao F, Shi Y

EMDB-24230:
Cryo-EM structure of human TMEM120A
Method: single particle / : Jing JX, Yan YH

EMDB-0830:
Structure of the human sterol O-acyltransferase 1 tetramer in rhombic shape
Method: single particle / : Chen L, Guan C

EMDB-30228:
Varicella-zoster virus capsid
Method: single particle / : Wang PY, Qi JX

EMDB-0829:
Structure of the human sterol O-acyltransferase 1 tetramer in oval shape
Method: single particle / : Chen L, Guan C

EMDB-0831:
Structure of the human sterol O-acyltransferase 1 in complex with CI-976
Method: single particle / : Chen L, Guan C

EMDB-0832:
Structure of the human sterol O-acyltransferase 1 in resting state
Method: single particle / : Chen L, Guan C

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more