[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 278 items for (author: seki & s)

EMDB-62853:
Glycogen phosphorylase from Segatella copri
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-63736:
Glycogen phosphorylase dimer from E. coli
Method: single particle / : Takai M, Fukuda Y, Inoue T

EMDB-63749:
Glycogen phosphorylase from Segatella copri bound to glycogen-chain A and E
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-63814:
Glycogen phosphorylase from Segatella copri in complex with AMP
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-63816:
Glycogen phosphorylase from Segatella copri pentamer in complex with AMP chains D and E
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-64491:
Glycogen phosphorylase from Segatella copri decamer in complex with AMP
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-64514:
Glycogen phosphorylase from Segatella copri bound to glycogen-pentamer
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-64926:
Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (monomer form)
Method: single particle / : Takai M, Tanino H, Shobu K, Fukuda Y, Inoue T

EMDB-64927:
Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (dimer form)
Method: single particle / : Takai M, Tanino H, Shobu K, Fukuda Y, Inoue T

EMDB-64931:
Cryo-EM map of glycogen phosphorylase from Dorea longicatena (monomer form with extra density)
Method: single particle / : Takai M, Tanino H, Shobu K, Fukuda Y, Inoue T

EMDB-65042:
Glycogen phosphorylase dimer from E. coli in complex with glycogen
Method: single particle / : Takai M, Fukuda Y, Inoue T

EMDB-67417:
R583A mutant of glycogen phosphorylase from Segatella copri
Method: single particle / : Takai M, Fukuda Y

EMDB-67418:
R583A mutant of glycogen phosphorylase from Segatella copri in the presence of AMP
Method: single particle / : Takai M, Fukuda Y

PDB-20yr:
R583A mutant of glycogen phosphorylase from Segatella copri
Method: single particle / : Takai M, Fukuda Y

PDB-20ys:
R583A mutant of glycogen phosphorylase from Segatella copri in the presence of AMP
Method: single particle / : Takai M, Fukuda Y

PDB-9l6i:
Glycogen phosphorylase from Segatella copri
Method: single particle / : Shobu K, Fukuda Y, Inoue T

PDB-9m9p:
Glycogen phosphorylase dimer from E. coli
Method: single particle / : Takai M, Fukuda Y, Inoue T

PDB-9ma8:
Glycogen phosphorylase from Segatella copri bound to glycogen-chain A and E
Method: single particle / : Shobu K, Fukuda Y, Inoue T

PDB-9u3a:
Glycogen phosphorylase from Segatella copri in complex with AMP
Method: single particle / : Shobu K, Fukuda Y, Inoue T

PDB-9u3k:
Glycogen phosphorylase from Segatella copri pentamer in complex with AMP chains D and E
Method: single particle / : Shobu K, Fukuda Y, Inoue T

PDB-9utg:
Glycogen phosphorylase from Segatella copri decamer in complex with AMP
Method: single particle / : Shobu K, Fukuda Y, Inoue T

PDB-9uup:
Glycogen phosphorylase from Segatella copri bound to glycogen-pentamer
Method: single particle / : Shobu K, Fukuda Y, Inoue T

PDB-9vbl:
Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (monomer form)
Method: single particle / : Takai M, Tanino H, Shobu K, Fukuda Y, Inoue T

PDB-9vbm:
Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (dimer form)
Method: single particle / : Takai M, Tanino H, Shobu K, Fukuda Y, Inoue T

EMDB-68371:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, Spt6 reconstruction)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-68372:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, Spt6-Set2(AID) reconstruction)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-68373:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, Nucleosome-Set2(CD) reconstruction)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-64036:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

PDB-9uc6:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

EMDB-63799:
Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a (rVCP) from Trachydiscus minutus at 2.4 angstrom
Method: single particle / : Seki S, Litvin R, Bina D, Tanaka H, Miyata T, Namba K, Kurisu G, Polivka T, Fujii R

PDB-9mcc:
Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a (rVCP) from Trachydiscus minutus at 2.4 angstrom
Method: single particle / : Seki S, Litvin R, Bina D, Tanaka H, Miyata T, Namba K, Kurisu G, Polivka T, Fujii R

EMDB-66103:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66104:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66105:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66106:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66107:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, FACT-hexamer)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wms:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmt:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmu:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmv:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmw:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, FACT-hexamer)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-62570:
Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, WT
Method: helical / : Inaoka D, Miyata T, Makino F, Ohtani Y, Ekari M, Kobayashi R, Imamura K, Sakamoto E, Kodama ST, Yoshida N, Kato T, Namba K, Tochio H, Sekiyama N

EMDB-62571:
Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, G355R
Method: helical / : Inaoka D, Miyata T, Makino F, Ohtani Y, Ekari M, Kobayashi R, Imamura K, Sakamoto E, Kodama ST, Yoshida N, Kato T, Namba K, Tochio H, Sekiyama N

PDB-9kty:
Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, WT
Method: helical / : Inaoka D, Miyata T, Makino F, Ohtani Y, Ekari M, Kobayashi R, Imamura K, Sakamoto E, Kodama ST, Yoshida N, Kato T, Namba K, Tochio H, Sekiyama N

PDB-9ktz:
Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, G355R
Method: helical / : Inaoka D, Miyata T, Makino F, Ohtani Y, Ekari M, Kobayashi R, Imamura K, Sakamoto E, Kodama ST, Yoshida N, Kato T, Namba K, Tochio H, Sekiyama N

EMDB-62028:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

PDB-9k3t:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

EMDB-64064:
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, in the absence of Na+, middle state
Method: single particle / : Ishikawa-Fukuda M, Kishikawa J, Kato T, Murai M

PDB-9ud8:
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, in the absence of Na+, middle state
Method: single particle / : Ishikawa-Fukuda M, Kishikawa J, Kato T, Murai M

EMDB-64789:
cryo-EM structure of hexameric ArnA
Method: single particle / : Caliseki M, Borucu U, Kadapalakere SY, Schaffitzel C, Kabasakal BV

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more