[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 989 items for (author: sato & c)

EMDB-63560:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

PDB-9m0p:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

EMDB-66472:
Target analog-bound type III-B Cmr complex of Archaeoglobus fulgidus
Method: single particle / : Ishihara K, Numata T

PDB-9x25:
Target analog-bound type III-B Cmr complex of Archaeoglobus fulgidus
Method: single particle / : Ishihara K, Numata T

EMDB-62868:
Cryo-EM structure of the d16:1 S1P-bound S1PR3 and Gq complex
Method: single particle / : Im D, Asada H, Iwata S, Yamauchi M, Hagiwara M

EMDB-66136:
Cryo-EM structure of the d18:1 S1P-bound S1PR3 and Gq complex
Method: single particle / : Im D, Asada H, Iwata S, Yamauchi M, Hagiwara M

PDB-9l74:
Cryo-EM structure of the d16:1 S1P-bound S1PR3 and Gq complex
Method: single particle / : Im D, Asada H, Iwata S, Yamauchi M, Hagiwara M

PDB-9wp9:
Cryo-EM structure of the d18:1 S1P-bound S1PR3 and Gq complex
Method: single particle / : Im D, Asada H, Iwata S, Yamauchi M, Hagiwara M

EMDB-53068:
Cryo-EM map of P. furiosus 70S grown at 95 degrees
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53069:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53070:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53071:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53072:
Consensus cryo-EM map of P furiosus 70S grown at 102degC
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53073:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53074:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53076:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53077:
Consensus cryo-EM map of P. furiosus 70S in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53078:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53079:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53080:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53098:
Structure of P. furiosus 70S ribosome grown at 95 degC
Method: single particle / : Matzov D, Georgeson G, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53099:
Structure of P. furiosus 70S ribosome grown at 102deg
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53100:
Structure of P. furiosus 70S ribosome in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf4:
Structure of P. furiosus 70S ribosome grown at 95 degC
Method: single particle / : Matzov D, Georgeson G, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf5:
Structure of P. furiosus 70S ribosome grown at 102deg
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf6:
Structure of P. furiosus 70S ribosome in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-60263:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

PDB-8zmz:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

EMDB-39666:
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Hagio H, Endow SA, Nitta R

PDB-8yy4:
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Hagio H, Endow SA, Nitta R

EMDB-39664:
Kinesin-14 in nucleotide-free state bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39665:
Kinesin-14 in nucleotide-free state bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39667:
Kinesin-14 with AlF3 bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39668:
Kinesin-14 with AMPPNP bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39669:
Kinesin-14 with AMPPNP bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy2:
Kinesin-14 in nucleotide-free state bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy3:
Kinesin-14 in nucleotide-free state bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy5:
Kinesin-14 with AlF3 bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-65777:
Cryo-EM structure of the mouse kinesin-2 tail in complex with KAP3 adaptor
Method: single particle / : Jiang X, Danev R, Yanagisawa H, Kikkawa M

EMDB-65778:
Cryo-EM structure of the kinesin-2 tail domain in complex with KAP3 and APC
Method: single particle / : Jiang X, Danev R, Yanagisawa H, Kikkawa M

PDB-9w9h:
Cryo-EM structure of the mouse kinesin-2 tail in complex with KAP3 adaptor
Method: single particle / : Jiang X, Danev R, Yanagisawa H, Kikkawa M

PDB-9w9i:
Cryo-EM structure of the kinesin-2 tail domain in complex with KAP3 and APC
Method: single particle / : Jiang X, Danev R, Yanagisawa H, Kikkawa M

EMDB-63003:
The complex structure of Escherichia coli AdhE (compact conformation)
Method: single particle / : Konno N, Miyake K, Nishino S, Omae K, Yanagisawa H, Tsuru S, Kikkawa M, Furusawa C, Iwasaki W

EMDB-63004:
The complex structure of Halomonas eurihalina BdhE
Method: single particle / : Konno N, Miyake K, Nishino S, Omae K, Yanagisawa H, Tsuru S, Kikkawa M, Furusawa C, Iwasaki W

PDB-9ldk:
The complex structure of Escherichia coli AdhE (compact conformation)
Method: single particle / : Konno N, Miyake K, Nishino S, Omae K, Yanagisawa H, Tsuru S, Kikkawa M, Furusawa C, Iwasaki W

PDB-9ldl:
The complex structure of Halomonas eurihalina BdhE
Method: single particle / : Konno N, Miyake K, Nishino S, Omae K, Yanagisawa H, Tsuru S, Kikkawa M, Furusawa C, Iwasaki W

EMDB-65631:
Subtomogram average of MJ1HA S-layer
Method: subtomogram averaging / : Goto-Ito S, Yamagata A, Lee Y, Ehara H, Ito T

EMDB-65632:
Subtomogram average of MJ1 attachment organelle
Method: subtomogram averaging / : Goto-Ito S, Yamagata A, Lee Y, Ehara H, Ito T

EMDB-63603:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-65045:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more