[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 468 items for (author: sali & a)

EMDB-73803:
Cryo-EM structure of human Wntless in complex with Wnt5a at 1:1 stoichiometry
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Wang Z, Salic A, Jiang J, Huang P

EMDB-73810:
Cryo-EM structure of human Wntless in its apo state
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73835:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Focused map A
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73836:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Focused map B
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73837:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Consensus map
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73838:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Composite map
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

PDB-9z4h:
Cryo-EM structure of human Wntless in complex with Wnt5a at 1:1 stoichiometry
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Wang Z, Salic A, Jiang J, Huang P

PDB-9z4o:
Cryo-EM structure of human Wntless in its apo state
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

PDB-9z67:
Cryo-EM structure of human Wntless-Wnt5a 2:2 complex - Composite map
Method: single particle / : Ge Y, de Almeida Magalhaes T, Wu H, Yadav GP, Wang Z, Salic A, Jiang J, Huang P

EMDB-73991:
Cryo-EM structure of human apo mTORC2
Method: single particle / : Wranik M, Lee JM, Rogala KB

EMDB-73992:
mTORC2 in complex with Akt1
Method: single particle / : Wranik M, Lee JM, Rogala KB

PDB-9zbj:
Cryo-EM structure of human apo mTORC2
Method: single particle / : Wranik M, Lee JM, Rogala KB

PDB-9zbk:
mTORC2 in complex with Akt1
Method: single particle / : Wranik M, Lee JM, Rogala KB

EMDB-75641:
Full-length BG505 HIV-1 Env expressed in VLP
Method: subtomogram averaging / : Duquette M, Villa E

EMDB-53950:
SsCl at pH 6.5 - closed
Method: single particle / : Kleiz-Ferreira J, Brams M, Harrison PJ, Gallagher C, Nys M, Donze Y, Quigley A, Bertrand D, Ulens C

EMDB-53951:
SsCl at pH 6.5 + IVM - Partially opened
Method: single particle / : Kleiz-Ferreira J, Brams M, Harrison PJ, Gallagher C, Nys M, Donze Y, Quigley A, Bertrand D, Ulens C

EMDB-53952:
SsCl at pH 9 - Desensitized
Method: single particle / : Kleiz-Ferreira J, Brams M, Harrison PJ, Gallagher C, Nys M, Donze Y, Quigley A, Bertrand D, Ulens C

EMDB-53953:
SsCl at pH 9 + IVM - Opened
Method: single particle / : Kleiz-Ferreira J, Brams M, Harrison PJ, Gallagher C, Nys M, Donze Y, Quigley A, Bertrand D, Ulens C

PDB-9rgm:
SsCl at pH 6.5 - closed
Method: single particle / : Kleiz-Ferreira J, Brams M, Harrison PJ, Gallagher C, Nys M, Donze Y, Quigley A, Bertrand D, Ulens C

PDB-9rgn:
SsCl at pH 6.5 + IVM - Partially opened
Method: single particle / : Kleiz-Ferreira J, Brams M, Harrison PJ, Gallagher C, Nys M, Donze Y, Quigley A, Bertrand D, Ulens C

PDB-9rgo:
SsCl at pH 9 - Desensitized
Method: single particle / : Kleiz-Ferreira J, Brams M, Harrison PJ, Gallagher C, Nys M, Donze Y, Quigley A, Bertrand D, Ulens C

PDB-9rgp:
SsCl at pH 9 + IVM - Opened
Method: single particle / : Kleiz-Ferreira J, Brams M, Harrison PJ, Gallagher C, Nys M, Donze Y, Quigley A, Bertrand D, Ulens C

EMDB-71610:
The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-bapE promoter transcription activation complex
Method: single particle / : Singh RR, Schumacher MA

EMDB-71615:
The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-CCNA_03891/CCNA_01149 promoter transcription activation complex
Method: single particle / : Singh RR, Schumacher MA

EMDB-71624:
The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-didA promoter transcription activation complex
Method: single particle / : Singh RR, Schumacher MA

EMDB-71632:
The cryo-EM structure of C. crescentus RNAP-Sigma73-CCNA_03891/CCNA_01149 promoter complex
Method: single particle / : Singh RR, Schumacher MA

PDB-9pfq:
The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-bapE promoter transcription activation complex
Method: single particle / : Singh RR, Schumacher MA

PDB-9pfv:
The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-CCNA_03891/CCNA_01149 promoter transcription activation complex
Method: single particle / : Singh RR, Schumacher MA

PDB-9pga:
The cryo-EM structure of C. crescentus DriD-ssDNA-RNAP-Sigma73-didA promoter transcription activation complex
Method: single particle / : Singh RR, Schumacher MA

PDB-9pgh:
The cryo-EM structure of C. crescentus RNAP-Sigma73-CCNA_03891/CCNA_01149 promoter complex
Method: single particle / : Singh RR, Schumacher MA

EMDB-49520:
Focused refinement of the prefusion F glycoprotein ectodomain of Nipah virus in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-73766:
Mitochondrial Creatine Kinase in complex with ADP, creatine, and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

EMDB-73767:
Mitochondrial Creatine Kinase in complex with ADP and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

PDB-9z2d:
Mitochondrial Creatine Kinase in complex with ADP, creatine, and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

PDB-9z2f:
Mitochondrial Creatine Kinase in complex with ADP and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

EMDB-45440:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

PDB-9cca:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

EMDB-45530:
STRUCTURE OF CD4 MIMETIC CJF-III-288 IN COMPLEX WITH BG505 SOSIP.664 HIV-1ENV TRIMER AND 17B FAB
Method: single particle / : Niu L, Tolbert WD, Pazgier M

PDB-9cf5:
STRUCTURE OF CD4 MIMETIC CJF-III-288 IN COMPLEX WITH BG505 SOSIP.664 HIV-1ENV TRIMER AND 17B FAB
Method: single particle / : Niu L, Tolbert WD, Pazgier M

EMDB-47558:
Representative tomogram of Caulobacter crescentus with DL6-PopZ
Method: electron tomography / : Lasker K, Park D

EMDB-70451:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex closed conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

EMDB-70453:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex 1 RBD up conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

EMDB-70454:
Apo SARS-COV-2-6P-MUT7 S PROTEIN closed conformation
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

EMDB-70455:
APO SARS-COV-2-6P-MUT7 S PROTEIN 1 RBD UP CONFORMATION
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

PDB-9og4:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex closed conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

PDB-9og5:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex 1 RBD up conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

PDB-9og6:
Apo SARS-COV-2-6P-MUT7 S PROTEIN closed conformation
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

PDB-9og7:
APO SARS-COV-2-6P-MUT7 S PROTEIN 1 RBD UP CONFORMATION
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

EMDB-47539:
Representative tomogram of WT-PopZ condensate
Method: electron tomography / : Lasker K, Park D

EMDB-47540:
Representative tomogram of OD-PopZ condensate
Method: electron tomography / : Lasker K, Park D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more