[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 224 items for (author: rayan & b)

EMDB-49747:
MPXV replisome bound to ssDNA
Method: single particle / : Yu Z, Abraham J

EMDB-75504:
MPXV replisome bound to forked DNA
Method: single particle / : Yu Z, Abraham J

EMDB-76148:
MPXV polymerase-E5 primase core complex
Method: single particle / : Yu Z, Abarham J

EMDB-53928:
Cryo-EM structure of amyloidogenic antimicrobial peptide Aurein 1.2 polymorph 1 in acqueous solution
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

EMDB-53942:
Cryo-EM structure of amyloidogenic antimicrobial peptide aurein 1.2 polymorph 2 in aqueous solution
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

EMDB-54645:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in water
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

EMDB-54646:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in PBS pH 6.5
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

EMDB-54647:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 2 in PBS pH 6.5
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

PDB-9rd7:
Cryo-EM structure of amyloidogenic antimicrobial peptide Aurein 1.2 polymorph 1 in acqueous solution
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

PDB-9rfv:
Cryo-EM structure of amyloidogenic antimicrobial peptide aurein 1.2 polymorph 2 in aqueous solution
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

PDB-9s7o:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in water
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

PDB-9s7p:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in PBS pH 6.5
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

PDB-9s7q:
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 2 in PBS pH 6.5
Method: helical / : Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

EMDB-77477:
apo-bmCCAN consensus refinement
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70561:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70567:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

PDB-9oke:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okk:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

EMDB-55048:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-55049:
CryoEM structure of NADH:quinone oxidoreductases YjlCD fiber's HMP extremity from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-55050:
CryoEM structure of NADH:quinone oxidoreductases YjlCD fiber's N-terminal extremity from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

PDB-9snk:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-70558:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70560:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70568:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okb:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okd:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okl:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

EMDB-76979:
Cryo-ET of mitochondrial membrane in direct interaction with alpha-synuclein exhibiting membrane morphological distortion
Method: electron tomography / : Jaber N, Dai W

EMDB-76980:
Supplemental: irregularly shaped mitochondria interacting with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-76981:
Supplemental: alpha-synuclein oligomers on the surface of a mitochondrial membrane
Method: electron tomography / : Jaber N, Dai W

EMDB-76983:
Supplemental: mitochondria not associated with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-55171:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)
Method: single particle / : Hassan AH, Demo G

EMDB-55173:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)
Method: single particle / : Hassan AH, Demo G

EMDB-55174:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)
Method: single particle / : Hassan AH, Demo G

EMDB-55176:
pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
Method: single particle / : Hassan AH, Demo G

EMDB-55177:
50S ribosomal subunit in rimM-KO with RsfS (+H68)
Method: single particle / : Hassan AH, Demo G

EMDB-55178:
70S ribosome from RimM-KO
Method: single particle / : Hassan AH, Demo G

EMDB-55181:
30S ribosomal subunit RimM-WT with IF1 and IF3
Method: single particle / : Hassan AH, Demo G

EMDB-55182:
pre-50S ribosomal subunit from RimM-WT with RsfS (-H68)
Method: single particle / : Hassan AH, Demo G

EMDB-55183:
50S ribosomal subunit from RimM-WT with RsfS (+H68)
Method: single particle / : Hassan AH, Demo G

EMDB-55185:
70S ribosome from RimM-WT
Method: single particle / : Hassan AH, Demo G

PDB-9ss0:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)
Method: single particle / : Hassan AH, Demo G

PDB-9ss1:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)
Method: single particle / : Hassan AH, Demo G

PDB-9ss2:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)
Method: single particle / : Hassan AH, Demo G

PDB-9ss4:
pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
Method: single particle / : Hassan AH, Demo G

PDB-9ss5:
50S ribosomal subunit in rimM-KO with RsfS (+H68)
Method: single particle / : Hassan AH, Demo G

PDB-9ss6:
70S ribosome from RimM-KO
Method: single particle / : Hassan AH, Demo G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more