[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 406 items for (author: rana & j)

EMDB-74281:
C. elegans PEZO-1 Isoform G
Method: single particle / : Bell B, Baker ML, Vasquez V

EMDB-74283:
C. elegans PEZO-1 Isoform K
Method: single particle / : Bell B, Baker ML, Vasquez V

PDB-9zis:
C. elegans PEZO-1 Isoform G
Method: single particle / : Bell B, Baker ML, Vasquez V

PDB-9zit:
C. elegans PEZO-1 Isoform K
Method: single particle / : Bell B, Baker ML, Vasquez V

EMDB-74433:
Low-resolution electron density map of C. elegans PEZO-1 Isoform L
Method: single particle / : Bell B, Vasquez V

EMDB-72538:
Human papillomavirus purified from lysosomes
Method: single particle / : Sutanto R, Rana J, Mosalaganti S

EMDB-53386:
Asgard Archaeal HHoB nucleosome in the closed conformation
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-53387:
Asgard HHoB hypernucleosome in the closed state
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-53388:
Asgard HHoB nucleosome in the open state
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-53389:
Asgard HHoB open hypernucleosome
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-53390:
Asgard HHoB nucleosome map in the open state in 0mM MgCl2
Method: single particle / : Ranawat HM, Dodonova SO

PDB-9qv5:
Asgard Archaeal HHoB nucleosome in the closed conformation
Method: single particle / : Ranawat HM, Dodonova SO

PDB-9qv6:
Asgard HHoB hypernucleosome in the closed state
Method: single particle / : Ranawat HM, Dodonova SO

PDB-9qv7:
Asgard HHoB nucleosome in the open state
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-48111:
Human M5 muscarinic acetylcholine receptor complex with mini-Gq and iperoxo
Method: single particle / : Burger WAC, Mobbs JI, Thal DM

PDB-9ek0:
Human M5 muscarinic acetylcholine receptor complex with mini-Gq and iperoxo
Method: single particle / : Burger WAC, Mobbs JI, Thal DM

EMDB-47080:
Sub-tomogram average of the V-ATPase from isolated lysosomes
Method: subtomogram averaging / : De Jesus-Perez JJ, Mcveigh B, Mihelc EM, Moiseenkova-Bell VY

EMDB-47081:
Sub-tomogram average of the Flotillin from isolated lysosomes
Method: subtomogram averaging / : De Jesus-Perez JJ, Mcveigh B, Mihelc EM, Moiseenkova-Bell VY

EMDB-49944:
Sub-tomogram average of the Clathrin from isolated lysosomes
Method: subtomogram averaging / : De Jesus-Perez JJ, Mcveigh B, Mihelc EM, Moiseenkova-Bell VY

EMDB-39423:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CXCL8
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

PDB-8ynf:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CXCL8
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-51567:
Collagen VI alpha 1, 2, 3 heterotrimer recombinant C terminal region. Local refinement.
Method: single particle / : Godwin A, Snee M, Dajani R, Becker M, Roseman A, Baldock C

EMDB-51984:
Bovine collagen VI local refinement of C-terminal region
Method: single particle / : Godwin A, Snee M, Roseman A, Baldock C

EMDB-52362:
Structure of the double bead region of bovine collagen VI microfibrils.
Method: single particle / : Godwin ARF, Baldock C, Snee MM, Roseman AM

EMDB-52366:
Structure of the single bead region of bovine collagen VI microfibrils.
Method: single particle / : Godwin ARF, Baldock C, Snee MM, Roseman AM

PDB-9gtu:
Collagen VI alpha 1, 2, 3 heterotrimer recombinant C terminal region. Local refinement.
Method: single particle / : Godwin A, Snee M, Dajani R, Becker M, Roseman A, Baldock C

PDB-9han:
Bovine collagen VI local refinement of C-terminal region
Method: single particle / : Godwin A, Snee M, Roseman A, Baldock C

EMDB-48110:
Human M5 muscarinic acetylcholine receptor complex with mini-Gq, agonist acetylcholine and positive allosteric modulator VU6007678
Method: single particle / : Burger WAC, Mobbs JI, Thal DM

PDB-9ejz:
Human M5 muscarinic acetylcholine receptor complex with mini-Gq, agonist acetylcholine and positive allosteric modulator VU6007678
Method: single particle / : Burger WAC, Mobbs JI, Thal DM

EMDB-39984:
Cryo-EM structure of Mycobacteriophage Douge genome-packed vertex (gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39990:
Cryo-EM structure of Mycobacteriophage Douge genome-free vertex (gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

PDB-8zdk:
Cryo-EM structure of Mycobacteriophage Douge genome-packed vertex (gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

PDB-8zdm:
Cryo-EM structure of Mycobacteriophage Douge genome-free vertex (gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-60714:
Cryo-EM structure of Mycobacteriophage Douge genome-packed connector-vertex (gp5, gp8, gp9, gp10, gp12, gp13 and gp113
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-60715:
Cryo-EM structure of Mycobacteriophage Douge genome-free connector vertex (gp5, gp8, gp9, gp10, gp12 and gp13)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39973:
Cryo-EM structure of Mycobacteriophage Douge genome-packed capsid (gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39974:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-packed capsid (Penton region: gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39975:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-packed capsid (P-hexon region: gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39976:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-packed capsid (C-hexon region: gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39977:
Composite cryo-EM map of Mycobacteriophage Douge genome-packed capsid (Penton, P-hexon and C-hexon region: gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39978:
Cryo-EM structure of Mycobacteriophage Douge genome-free capsid (gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39979:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-free capsid (Penton region: gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39980:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-free capsid (P-hexon region: gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39981:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-free capsid (C-hexon region: gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39982:
Composite cryo-EM map of Mycobacteriophage Douge genome-free capsid (Penton, P-hexon and C-hexon region: gp8)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39983:
Cryo-EM structure of Mycobacteriophage Douge genome-packed connector (gp5, gp9, gp10, gp12 and gp13)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39985:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-packed connector (gp5 and gp9)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39986:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-packed connector (gp10, gp12 and gp13)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39987:
Focused refinement cryo-EM map of Mycobacteriophage Douge genome-packed connector (gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

EMDB-39988:
Composite cryo-EM map of Mycobacteriophage Douge genome-packed connector-vertex (gp5, gp9, gp10, gp12, gp13, gp8 and gp113)
Method: single particle / : Maharana J, Wang CH, Tsai LA, Lowary TL, Ho MC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more