[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 81 items for (author: qi & jx)

EMDB-38502:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 spike protein(6P) in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38826:
Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-38827:
Cryo-EM structure of SARS-CoV-2 Omicron JN.1 RBD in complex with human ACE2 (local refinement from the spike protein)
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-38937:
Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-38983:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 RBD in complex with human ACE2 and S309 Fab
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-38460:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 spike protein(6P), 1-RBD-up state
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38463:
Cryo-EM structure of SARS-CoV-2 Omicron EG.5 spike protein(6P), RBD-closed state
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38476:
Cryo-EM structure of SARS-CoV-2 Omicron HV.1 spike protein(6P), RBD-closed state
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38488:
Cryo-EM structure of SARS-CoV-2 Omicron EG.5.1 spike protein(6P), RBD-closed state
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38495:
SARS-CoV-2 Omicron EG.5.1 RBD in complex with human ACE2 (local refined from the spike protein)
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38496:
SARS-CoV-2 Omicron HV.1 RBD in complex with human ACE2 (local refinement from the spike protein)
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38498:
Cryo-EM structure of SARS-CoV-2 Omicron EG.5.1 spike protein(6P) in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-38505:
Cryo-EM structure of SARS-CoV-2 Omicron HV.1 spike protein(6P) in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Shi KY, Qi JX, Gao GF

EMDB-37711:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 RBD in complex with human ACE2
Method: single particle / : Li LJ, Gu YH, Qi JX, Gao GF

EMDB-36892:
Structure of BtKY72 spike receptor-binding domain (RBD) complexed with bat ACE2
Method: single particle / : Su C, Qi JX, Gao GF

EMDB-36672:
Cryo-EM structure of the N-terminal domain of Omicron BA.1 in complex with nanobody N235 and S2L20 Fab
Method: single particle / : Liu B, Liu HH, Han P, Qi JX

EMDB-39012:
Representative tomogram of primary glioblastoma stem cell with circular inter-mitochondrial junctions.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39015:
Representative tomogram of microglia cell with nanotunnel-like structures resembling mitochondrial fission.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39019:
Representative tomogram of glioblastoma cell with nanotunnel-like structure and inter-mitochondrial junction.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39021:
Representative tomogram of normal human astrocyte with nanotunnel-like structure which is an extension of the mitochondrial outer membrane.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39023:
Representative tomogram of primary glioblastoma differentiated cell with parallel inter-mitochondrial junction.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-39024:
Representative tomogram of primary glioblastoma stem cell with clustered mitochondria bearing various long-short axis ratios.
Method: electron tomography / : Wang R, Lei H, Wang HX, Qi L, Liu YE, Liu YH, Shi YF, Chen JX, Shen QT

EMDB-38543:
Cryo-EM map of the internal RuBisCOs in the alpha-carboxysome from Prochlorococcus MED4
Method: single particle / : Jiang YL, Zhou RQ, Zhou CZ, Zeng QL

EMDB-38544:
Cryo-EM map of the intact shell of alpha-carboxysome from Prochlorococcus MED4
Method: single particle / : Jiang YL, Zhou RQ, Zhou CZ, Zeng QL

EMDB-37902:
Cryo-EM structure of the alpha-carboxysome shell vertex from Prochlorococcus MED4
Method: single particle / : Jiang YL, Zhou RQ, Zhou CZ, Zeng QL

EMDB-37903:
Cryo-EM map of the intact alpha-carboxysome from Prochlorococcus MED4
Method: single particle / : Jiang YL, Zhou RQ, Zhou CZ, Zeng QL

EMDB-36057:
Cryo-EM map of DAM (a newly designed immunogen for monkeypox virus) in complex with half of the antigen-binding fragment (Fab) of A27D7 and the single-chain fragment variable (scFv) of 7D11
Method: single particle / : Wang H, Yin P, Zheng TT, Han P, Qi JX

EMDB-36056:
Cryo-EM map of half of DAM (the A35 part) in complex with the antigen-binding fragment (Fab) of A27D7
Method: single particle / : Wang H, Yin P, Zheng TT, Qin LJ, Han P, Qi JX

EMDB-34727:
Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with white-tailed deer ACE2
Method: single particle / : Han P, Meng YM, Qi JX

EMDB-34728:
SARS-CoV-2 Omicron BA.1 spike protein receptor-binding domain in complex with white-tailed deer ACE2
Method: single particle / : Han P, Meng YM, Qi JX

EMDB-34729:
Cryo-EM structure of SARS-CoV-2 prototype spike protein in complex with white-tailed deer ACE2
Method: single particle / : Han P, Meng YM, Qi JX

EMDB-34730:
Cryo-EM structure of SARS-CoV-2 prototype spike protein receptor-binding domain in complex with white-tailed deer ACE2
Method: single particle / : Han P, Meng YM, Qi JX

EMDB-35426:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 spike protein in complex with white-tailed deer ACE2
Method: single particle / : Han P, Meng YM, Qi JX

EMDB-35427:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 spike protein receptor-binding domain in complex with white-tailed deer ACE2
Method: single particle / : Han P, Meng YM, Qi JX

EMDB-33841:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.12.1 RBD in complex with human ACE2 (local refinement)
Method: single particle / : Zhao ZN, Xie YF, Qi JX, Gao GF

EMDB-33870:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with human ACE2 (local refinement)
Method: single particle / : Zhao ZN, Xie YF, Qi JX, Gao GF

EMDB-34120:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with golden hamster ACE2 (local refinement)
Method: single particle / : Zhao ZN, Xie YF, Chai Y, Qi JX, Gao GF

EMDB-34138:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with mouse ACE2 (local refinement)
Method: single particle / : Zhao ZN, Xie YF, Chai Y, Qi JX, Gao GF

EMDB-34217:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with rat ACE2 (local refinement)
Method: single particle / : Zhao ZN, Xie YF, Chai Y, Qi JX, Gao GF

EMDB-34409:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 RBD in complex with human ACE2 (local refinement)
Method: single particle / : Zhao ZN, Xie YF, Qi JX, Gao GF

EMDB-34494:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike trimer in complex with human ACE2 (three-RBD-up conformation)
Method: single particle / : Zhao ZN, Xie YF, Qi JX, Gao GF

EMDB-34498:
Cryo-EM map of SARS-CoV-2 Omicron BA.2.12.1 spike trimer in complex with human ACE2 (three-RBD-up conformation)
Method: single particle / : Zhao ZN, Xie YF, Qi JX, Gao GF

EMDB-34499:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike protein in complex with mouse ACE2
Method: single particle / : Zhao ZN, Xie YF, Chai Y, Qi JX, Gao GF

EMDB-34506:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike trimer in complex with rat ACE2
Method: single particle / : Zhao ZN, Xie YF, Chai Y, Qi JX, Gao GF

EMDB-34509:
Cryo-EM map of SARS-CoV-2 Omicron BA.4/5 (N658S) spike trimer in complex with human ACE2 (three-RBD-up conformation)
Method: single particle / : Zhao ZN, Xie YF, Qi JX, Gao GF

EMDB-34510:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike trimer in complex with golden hamster ACE2
Method: single particle / : Zhao ZN, Xie YF, Chai Y, Qi JX, Gao GF

EMDB-34227:
Cryo-EM structure of Singapore Grouper Iridovirus capsid block 1
Method: single particle / : Zhao ZN, Liu CC, Zhu DJ, Qi JX, Zhang XZ, Gao GF

EMDB-34229:
Cryo-EM structure of Singapore Grouper Iridovirus capsid block 4
Method: single particle / : Zhao ZN, Liu CC, Zhu DJ, Qi JX, Zhang XZ, Gao GF

EMDB-34230:
Cryo-EM structure of Singapore Grouper Iridovirus capsid block 2
Method: single particle / : Zhao ZN, Liu CC, Zhu DJ, Qi JX, Zhang XZ, Gao GF

EMDB-34235:
Cryo-EM structure of Singapore Grouper Iridovirus capsid block 3
Method: single particle / : Zhao ZN, Liu CC, Zhu DJ, Qi JX, Zhang XZ, Gao GF

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more