[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 54 items for (author: parker & je)

EMDB-51365:
Cryo-EM structure of human SLC45A4 in lipid nanodiscs
Method: single particle / : Markusson S, Newstead S

EMDB-51377:
Cryo-EM structure of human SLC45A4 in detergent
Method: single particle / : Markusson S, Deme JC, Lea SM, Newstead S

EMDB-48617:
SaPI1 neck structure with DNA, tail completion protein, and tape measure protein
Method: single particle / : Kizziah JL, Dokland T

PDB-9mu2:
SaPI1 neck structure with DNA, tail completion protein, and tape measure protein
Method: single particle / : Kizziah JL, Dokland T

EMDB-48618:
SaPI1 neck structure
Method: single particle / : Kizziah JL, Dokland T

PDB-9mu3:
SaPI1 neck structure
Method: single particle / : Kizziah JL, Dokland T

EMDB-39411:
Cryo-EM structure of NRG1A(LRR) in complex with EDS1-SAG101-(ADPr-ATP)
Method: single particle / : Huang S, Xiao Y, Chai J

EMDB-60049:
pRib-ADP bound OsEDS1-PAD4-ADR1 complex
Method: single particle / : Xu WY, Zhang Y

EMDB-43033:
Structure of 80alpha portal protein expressed in E. coli
Method: single particle / : Kizziah JL, Mukherjee A, Dokland T

EMDB-43142:
SaPI1 mature capsid structure containing DNA
Method: single particle / : Mukherjee A, Kizziah JL, Dokland T

EMDB-43143:
SaPI1 mature capsid structure without DNA
Method: single particle / : Mukherjee A, Kizziah JL, Dokland T

EMDB-43145:
SaPI1 portal structure in mature capsids containing DNA
Method: single particle / : Kizziah JL, Mukherjee A, Dokland T

EMDB-43146:
SaPI1 portal structure in mature capsids without DNA
Method: single particle / : Mukherjee A, Kizziah JL, Dokland T

EMDB-43147:
SaPI1 portal-capsid interface in mature capsids with DNA
Method: single particle / : Kizziah JL, Mukherjee A, Dokland T

PDB-8v8b:
Structure of 80alpha portal protein expressed in E. coli
Method: single particle / : Kizziah JL, Mukherjee A, Dokland T

PDB-8vd4:
SaPI1 mature capsid structure containing DNA
Method: single particle / : Mukherjee A, Kizziah JL, Dokland T

PDB-8vd5:
SaPI1 mature capsid structure without DNA
Method: single particle / : Mukherjee A, Kizziah JL, Dokland T

PDB-8vd8:
SaPI1 portal structure in mature capsids containing DNA
Method: single particle / : Kizziah JL, Mukherjee A, Dokland T

PDB-8vdc:
SaPI1 portal structure in mature capsids without DNA
Method: single particle / : Mukherjee A, Kizziah JL, Dokland T

PDB-8vde:
SaPI1 portal-capsid interface in mature capsids with DNA
Method: single particle / : Kizziah JL, Mukherjee A, Dokland T

EMDB-33233:
Cryo-EM structure of EDS1 and SAG101 with ATP-APDR
Method: single particle / : Huang SJ, Jia AL, Han ZF, Chai JJ

EMDB-33144:
Cryo-EM structure of EDS1 and PAD4
Method: single particle / : Huang SJ, Jia AL, Sun Y, Han ZF, Chai JJ

EMDB-24408:
The Capsid Structure of the ChAdOx1 viral vector/chimpanzee adenovirus Y25
Method: single particle / : Baker AT, Boyd RJ

PDB-7rd1:
The Capsid Structure of the ChAdOx1 viral vector/chimpanzee adenovirus Y25
Method: single particle / : Baker AT, Boyd RJ, Sarkar D, Vermaas JV, Williams D, Singharoy A

EMDB-23574:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib.
Method: single particle / : Liu B, Hanssen E, Leis AP, Xie SC, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

EMDB-23575:
Structure of Plasmodium falciparum 20S proteasome with bound ML052.
Method: single particle / : Hanssen E, Liu B, Leis AP, Xie SC, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

EMDB-23576:
Structure of human 20S proteasome with bound ML052.
Method: single particle / : Hanssen E, Xie SC, Liu B, Leis AP, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

PDB-7lxt:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib
Method: single particle / : Morton CJ, Metcalfe RD, Liu B, Xie SC, Hanssen E, Leis AP, Tilley L, Griffin MDW

PDB-7lxu:
Structure of Plasmodium falciparum 20S proteasome with bound MPI-5
Method: single particle / : Metcalfe RD, Morton CJ, Xie SC, Liu B, Hanssen E, Leis AP, Tilley L, Griffin MDW

PDB-7lxv:
Structure of human 20S proteasome with bound MPI-5
Method: single particle / : Metcalfe RD, Morton CJ, Liu B, Xie SC, Hanssen E, Leis AP, Tilley L, Griffin MDW

EMDB-12585:
Trimeric SARS-CoV-2 spike ectodomain in complex with biliverdin (closed conformation)
Method: single particle / : Rosa A, Pye VE

EMDB-12586:
Trimeric SARS-CoV-2 spike ectodomain in complex with biliverdin (one RBD erect)
Method: single particle / : Rosa A, Pye VE

EMDB-12587:
Trimeric SARS-CoV-2 spike ectodomain bound to P008_056 Fab
Method: single particle / : Rosa A, Pye VE

PDB-7nt9:
Trimeric SARS-CoV-2 spike ectodomain in complex with biliverdin (closed conformation)
Method: single particle / : Rosa A, Pye VE, Nans A, Cherepanov P

PDB-7nta:
Trimeric SARS-CoV-2 spike ectodomain in complex with biliverdin (one RBD erect)
Method: single particle / : Rosa A, Pye VE, Nans A, Cherepanov P

PDB-7ntc:
Trimeric SARS-CoV-2 spike ectodomain bound to P008_056 Fab
Method: single particle / : Rosa A, Pye VE, Nans A, Cherepanov P

EMDB-30449:
Cryo-EM structure of plant NLR RPP1 LRR-ID domain in complex with ATR1
Method: single particle / : Ma SC, Lapin D

EMDB-30450:
Cryo-EM structure of plant NLR RPP1 tetramer in complex with ATR1
Method: single particle / : Ma SC, Lapin D

EMDB-30451:
Cryo-EM map of RPP1 mutant in complex with ATR1
Method: single particle / : Ma SC, Lapin D, Liu L, Sun Y, Song W, Zhang XX, Logemann E, Yu DL, Wang J, Jirschitzka J, Han ZF, SchulzeLefert P, Parker JE, Chai JJ

EMDB-30579:
Cryo-EM structure of plant NLR RPP1 tetramer core part
Method: single particle / : Ma SC, Lapin D, Liu L, Sun Y, Song W, Zhang XX, Logemann E, Yu DL, Wang J, Jirschitzka J, Han ZF, SchulzeLefert P, Parker JE, Chai JJ

EMDB-0410:
Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
Method: single particle / : Zhao LH, Ma S

EMDB-0411:
Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
Method: single particle / : Zhao LH, Ma S

EMDB-0412:
Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
Method: single particle / : Zhao LH, Ma S

PDB-6nbf:
Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
Method: single particle / : Zhao LH, Ma S, Sutkeviciute I, Shen DD, Zhou XE, de Waal PP, Li CY, Kang Y, Clark LJ, Jean-Alphonse FG, White AD, Xiao K, Yang D, Jiang Y, Watanabe T, Gardella TJ, Melcher K, Wang MW, Vilardaga JP, Xu HE, Zhang Y

PDB-6nbh:
Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
Method: single particle / : Zhao LH, Ma S, Sutkeviciute I, Shen DD, Zhou XE, de Waal PP, Li CY, Kang Y, Clark LJ, Jean-Alphonse FG, White AD, Xiao K, Yang D, Jiang Y, Watanabe T, Gardella TJ, Melcher K, Wang MW, Vilardaga JP, Xu HE, Zhang Y

PDB-6nbi:
Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
Method: single particle / : Zhao LH, Ma S, Sutkeviciute I, Shen DD, Zhou XE, de Waal PP, Li CY, Kang Y, Clark LJ, Jean-Alphonse FG, White AD, Xiao K, Yang D, Jiang Y, Watanabe T, Gardella TJ, Melcher K, Wang MW, Vilardaga JP, Xu HE, Zhang Y

EMDB-7517:
Rhodopsin-Gi
Method: single particle / : Kang Y, Xu HE

PDB-6cmo:
Rhodopsin-Gi complex
Method: single particle / : Kang Y, Kuybeda O, de Waal PW, Mukherjee S, Van Eps N, Dutka P, Zhou XE, Bartesaghi A, Erramilli S, Morizumi T, Gu X, Yin Y, Liu P, Jiang Y, Meng X, Zhao G, Melcher K, Earnst OP, Kossiakoff AA, Subramaniam S, Xu HE

EMDB-7030:
Staphylococcus aureus phage 80alpha procapsid
Method: single particle / : Kizziah JL, Dearborn AD

EMDB-7035:
Staphylococcus aureus pathogenicity island 1 80alpha-derived procapsid
Method: single particle / : Kizziah JL, Dearborn AD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more