[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 151 items for (author: pape & t)

EMDB-55743:
Cryo-EM structure of Heyndrickxia coagulans beta-galactosidase
Method: single particle / : Sanita G, Maresca E, Aulitto M, Capaldi S, Esposito E, Contursi P

PDB-9ta3:
Cryo-EM structure of Heyndrickxia coagulans beta-galactosidase
Method: single particle / : Sanita G, Maresca E, Aulitto M, Capaldi S, Esposito E, Contursi P

EMDB-53855:
CryoEM structure of a membrane protein associated with a contractile injection in Salmonella enterica subspecies salamae
Method: single particle / : Ejaz RN, Tillmann HP, Taylor NMI, Siborova M, Sofos NH

EMDB-53857:
Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath and inner tube module in extended state.
Method: helical / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

EMDB-53858:
Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath in contracted state.
Method: helical / : Ejaz RN, Tillmann HP, Taylor NMI, Siborova M, Sofos NH

EMDB-53859:
Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the cap portion in extended state.
Method: single particle / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

EMDB-53919:
Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the baseplate portion in extended state.
Method: single particle / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

PDB-9r9a:
CryoEM structure of a membrane protein associated with a contractile injection in Salmonella enterica subspecies salamae
Method: single particle / : Ejaz RN, Tillmann HP, Taylor NMI, Siborova M, Sofos NH

PDB-9r9h:
Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath and inner tube module in extended state.
Method: helical / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

PDB-9r9i:
Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath in contracted state.
Method: helical / : Ejaz RN, Tillmann HP, Taylor NMI, Siborova M, Sofos NH

PDB-9r9n:
Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the cap portion in extended state.
Method: single particle / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

PDB-9rce:
Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the baseplate portion in extended state.
Method: single particle / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

EMDB-53260:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo9:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-54384:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54398:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busandiego R

EMDB-54405:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54406:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54407:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54420:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54421:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54422:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54424:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54432:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54447:
Subtomogram average of synaptic microtubule from rat hippocampal neurons
Method: subtomogram averaging / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-53259:
Inward-open structure of human GABA transporter 3 bound to selective inhibitor SR-THAP
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo8:
Inward-open structure of human GABA transporter 3 bound to selective inhibitor SR-THAP
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-53046:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

PDB-9qe2:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

EMDB-54802:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

EMDB-54805:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

EMDB-54809:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

EMDB-54827:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

EMDB-54883:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

EMDB-54923:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

PDB-9se5:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

PDB-9sea:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

PDB-9seg:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

PDB-9sfl:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

PDB-9sh0:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

PDB-9si1:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

EMDB-53137:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53138:
Cryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53139:
Cryo-EM structure of the PlPVC1 cap, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53140:
Cryo-EM structure of the PlPVC1 fiber in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53141:
Cryo-EM structure of the PlPVC1 sheath, 6-fold symmetrized (C6), in contracted state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53143:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in contracted state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgl:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgm:
Cryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgn:
Cryo-EM structure of the PlPVC1 cap, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more