[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,821 items for (author: ott & m)

EMDB-73991:
Cryo-EM structure of human apo mTORC2
Method: single particle / : Wranik M, Lee JM, Rogala KB

EMDB-73992:
mTORC2 in complex with Akt1
Method: single particle / : Wranik M, Lee JM, Rogala KB

PDB-9zbj:
Cryo-EM structure of human apo mTORC2
Method: single particle / : Wranik M, Lee JM, Rogala KB

PDB-9zbk:
mTORC2 in complex with Akt1
Method: single particle / : Wranik M, Lee JM, Rogala KB

EMDB-72283:
Structure of the Measles Virus Fusion Glycoprotein Ectodomain in Postfusion Conformation Bound to Neutralizing Antibody H8
Method: single particle / : Zyla D, Niemeyer G, Porotto M, Saphire EO

PDB-9q71:
Structure of the Measles Virus Fusion Glycoprotein Ectodomain in Postfusion Conformation Bound to Neutralizing Antibody H8
Method: single particle / : Zyla D, Niemeyer G, Porotto M, Saphire EO

EMDB-72293:
Structure of the Measles Virus Fusion Glycoprotein Ectodomain in Prefusion Conformation Bound to Neutralizing Antibody H8
Method: single particle / : Zyla D, Niemeyer G, Porotto M, Saphire EO

PDB-9q7b:
Structure of the Measles Virus Fusion Glycoprotein Ectodomain in Prefusion Conformation Bound to Neutralizing Antibody H8
Method: single particle / : Zyla D, Niemeyer G, Porotto M, Saphire EO

EMDB-54787:
Cryo-EM structure of PfHT1 bound to 2,5-anhydro-D-mannitol
Method: single particle / : Gulati A, Suades A, Drew D

EMDB-72242:
Structure of the Measles virus Fusion glycoprotein ectodomain in complex with two neutralizing antibodies mAb77 and Y10F
Method: single particle / : Zyla D, Niemeyer G, Porotto M, Saphire EO

PDB-9q5v:
Structure of the Measles virus Fusion glycoprotein ectodomain in complex with two neutralizing antibodies mAb77 and Y10F
Method: single particle / : Zyla D, Niemeyer G, Porotto M, Saphire EO

EMDB-72240:
Structure of the Measles virus Fusion glycoprotein ectodomain in complex with neutralizing antibody Y10F
Method: single particle / : Zyla D, Niemeyer G, Porotto M, Saphire EO

PDB-9q5m:
Structure of the Measles virus Fusion glycoprotein ectodomain in complex with neutralizing antibody Y10F
Method: single particle / : Zyla D, Niemeyer G, Porotto M, Saphire EO

EMDB-56783:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 8694 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-56785:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 8500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Sauer DB, Dlamini LS

EMDB-56787:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 7500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-56789:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 6500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-56791:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 5500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-56793:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 4500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-56795:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 3500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-56797:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 2500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-56799:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 1500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-56801:
MBP-maltose bound to distal DARPin (AHIR dodecamer scaffold system from split dataset with 500 micrographs)
Method: single particle / : Ferreira DSM, Noble M, Rowland RJ, Fairhead M, Gittins O, von Delft F, Endicott J, Martin M, Pike ACW, Dlamini LS, Sauer DB

EMDB-75897:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75900:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-48049:
Octopus ribosome, empty 80S
Method: single particle / : Gao J, Yip MCJ, Han R, Grearson A, Shao S, Lee ASY

EMDB-48050:
Octopus ribosome, 60S (multibody)
Method: single particle / : Gao J, Yip MCJ, Han R, Grearson A, Shao S, Lee ASY

EMDB-48051:
Octopus ribosome, 40S (multibody)
Method: single particle / : Gao J, Yip MCJ, Han R, Grearson A, Shao S, Lee ASY

EMDB-70024:
Rhesus Macaque mAb CHM-27 complexed with SARS-CoV-2 spike protein
Method: single particle / : Lin RN, Ward AB

EMDB-70025:
Rhesus Macaque mAb CHM-16 complexed with SARS-CoV-2 spike protein
Method: single particle / : Lin RN, Ward AB

EMDB-70026:
Rhesus Macaque DHIK wk40 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-70027:
Rhesus Macaque DHJB wk12 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-70028:
Rhesus Macaque L603 wk53 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-70029:
Rhesus Macaque L603 wk40 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-70030:
Rhesus Macaque DHJB wk40 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-70031:
Rhesus Macaque L603 wk12 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-70032:
Rhesus Macaque K620 wk12 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-70033:
Rhesus Macaque K620 wk53 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-70034:
Rhesus Macaque K620 wk40 polyFab + SARS-CoV-2 Spike
Method: single particle / : Lin RN, Ward AB

EMDB-55303:
Adenovirus dodecahedron
Method: single particle / : Kabasakal BV, Buzas D, Bufton J, Berger-Schaffitzel C, Berger I

EMDB-55340:
Engineering the ADDomer Nanoparticle Vaccine Scaffold for Improved Assembly and Enhanced Stability.
Method: single particle / : Balchin G, Berger-Schaffitzel C, Berger I

EMDB-55341:
I4 map of CHIMPSELS_S57C full ADDomer.
Method: single particle / : Balchin G, Berger-Schaffitzel C, Berger I

EMDB-55342:
C1 CHIMPSELS_S57C ADDomer map.
Method: single particle / : Balchin G, Berger-Schaffitzel C, Berger I

PDB-9swa:
Adenovirus dodecahedron
Method: single particle / : Kabasakal BV, Buzas D, Bufton J, Berger-Schaffitzel C, Berger I

PDB-9sy5:
Engineering the ADDomer Nanoparticle Vaccine Scaffold for Improved Assembly and Enhanced Stability.
Method: single particle / : Balchin G, Berger-Schaffitzel C, Berger I

EMDB-74561:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 1
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-74562:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 2
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-74563:
Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 1
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-74564:
Nucleosome with an SSB at SHL -2.8 in complex with human PARP2 and HPF1, Class 2
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

EMDB-75074:
Nucleosome with an SSB at SHL -2.8 in complex with the WGR domain of human PARP2, Class 1, Consensus map
Method: single particle / : Kim TH, Jayathilake C, Virk RK, Gregory-Lott ER

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more