[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 98 items for (author: newton & nd)

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-72036:
Cryo-EM structure of the isethionate TRAP transporter IseQM from Oleidesulfovibrio alaskensis with bound isethionate
Method: single particle / : Newton-Vesty MC, Davies JS, Dobson RCJ

PDB-9pym:
Cryo-EM structure of the isethionate TRAP transporter IseQM from Oleidesulfovibrio alaskensis with bound isethionate
Method: single particle / : Newton-Vesty MC, Davies JS, Dobson RCJ

EMDB-48897:
Composite map for GluK2 in the apo state with asymmetric ligand binding domain
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-48898:
Composite map for GluK2 in the apo state with 2-fold symmetrical ligand-binding domain
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-48899:
Composite map for GluK2 in the open state, in complex with the positive allosteric modulator BPAM344 and agonist kainate
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-48900:
Composite map for GluK2-0xNeto2 in the apo state with asymmetric ligand-binding domain
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-48901:
Composite map for GluK2-1xNeto2 in the apo state
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-48902:
Composite map for GluK2-2xNeto2 in the apo state
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-48903:
Composite map for GluK2-0xNeto2 in the open state, in complex with the positive allosteric modulator BPAM344 and agonist kainate
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-48904:
Composite map for GluK2-1xNeto2 in the open state, in complex with the positive allosteric modulator BPAM344 and agonist kainate
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-48905:
Composite map for GluK2-2xNeto2 in the open state, in complex with the positive allosteric modulator BPAM344 and agonist kainate
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4l:
Composite map for GluK2 in the apo state with asymmetric ligand binding domain
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4m:
Composite map for GluK2 in the apo state with 2-fold symmetrical ligand-binding domain
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4n:
Composite map for GluK2 in the open state, in complex with the positive allosteric modulator BPAM344 and agonist kainate
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4o:
Composite map for GluK2-0xNeto2 in the apo state with asymmetric ligand-binding domain
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4p:
Composite map for GluK2-1xNeto2 in the apo state
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4q:
Composite map for GluK2-2xNeto2 in the apo state
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4r:
Composite map for GluK2-0xNeto2 in the open state, in complex with the positive allosteric modulator BPAM344 and agonist kainate
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4s:
Composite map for GluK2-1xNeto2 in the open state, in complex with the positive allosteric modulator BPAM344 and agonist kainate
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

PDB-9n4t:
Composite map for GluK2-2xNeto2 in the open state, in complex with the positive allosteric modulator BPAM344 and agonist kainate
Method: single particle / : Gangwar SP, Yelshanskaya MV, Yen LY, Newton TP, Sobolevsky AI

EMDB-44278:
Chimeric flavivirus between BinJV and YFV-17D
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44279:
Chimeric flavivirus between BinJV and YFV-ES504
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44280:
Chimeric flavivirus between BinJV and YFV-17D in complex with 2C9 Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44281:
Chimeric flavivirus between BinJV and YFV-ES504 in complex with 2C9 Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44282:
Chimeric flavivirus between BinJV and YFV-17D in complex with 5A Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44283:
Chimeric flavivirus between BinJV and YFV-ES504 in complex with 5A Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44284:
Chimeric flavivirus between BinJV and YFV-ES504 with YFV-17D DIII
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44285:
Chimeric flavivirus between BinJV and YFV-ES504 with YFV-17D DIII in complex with 2C9 Fab
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44286:
Chimeric flavivirus between BinJV and YFV-Asibi with YFV-17D DIII
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44287:
Chimeric flavivirus between BinJV and YFV-ES504 T380R
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-44288:
Envelope protein ASU of YFV-17D in complex with 2C9 Fab
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-44289:
Envelope protein ASU of YFV-ES504 with YFV-17D DIII
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-44290:
Envelope protein ASU of YFV-ES504 with YFV-17D DIII in complex with 2C9 Fab
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-44291:
Envelope protein ASU of YFV-Asibi with YFV-17D DIII
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-44292:
Envelope protein ASU of YFV-ES504 T380R
Method: single particle / : Bibby S, James J, Modhiran N, Watterson D

EMDB-49804:
Chimeric flavivirus between BinJV and YFV-Asibi
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-49805:
Chimeric flavivirus between BinJV and YFV-Asibi T380R
Method: single particle / : Bibby S, Jung J, Modhiran N, Watterson D

EMDB-46867:
The ternary complex of DDB1, DDA1, DET1
Method: single particle / : Schubert AF, Kschonsak M, Harris SF

PDB-9dhd:
The ternary complex of DDB1, DDA1, DET1
Method: single particle / : Schubert AF, Kschonsak M, Harris SF

EMDB-47295:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Philanthotoxin-74
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

EMDB-47296:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Nephilatoxin-8
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

EMDB-47297:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Spermine
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

EMDB-47298:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Kukoamine-A
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

PDB-9dxq:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Philanthotoxin-74
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

PDB-9dxr:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Nephilatoxin-8
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

PDB-9dxs:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Spermine
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

PDB-9dxt:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Kukoamine-A
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

EMDB-44585:
Cryo-EM structure of NINJ1 K45Q bound to Nb538
Method: single particle / : Pourmal S, Johnson MC, Deshpande I

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more