[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 53 items for (author: newman & ja)

EMDB-54169:
Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54170:
Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54171:
Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54173:
Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54175:
Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpr:
Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rps:
Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpt:
Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpw:
Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rqi:
Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-52749:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 1)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52750:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 2)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52751:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 3)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52752:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 4)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52753:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 5)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52754:
Cryo-EM structure of Shigella flexneri LptDE in complex with a Bicyclic Peptide binder (Compound 12)
Method: single particle / : Allyjaun S, Dunbar E, Hardwick SW, Chirgadze DY, Hubbard J, van den Berg B, Newman H

EMDB-52755:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 13)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52896:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 16)
Method: single particle / : Allyjaun S, Newman H, Chirgadze DY, Hardwick SW, Hubbard J, van den Berg B, Dunbar E

PDB-9i92:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 1)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i93:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 2)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i94:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 3)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i95:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 4)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i96:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 5)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i97:
Cryo-EM structure of Shigella flexneri LptDE in complex with a Bicyclic Peptide binder (Compound 12)
Method: single particle / : Allyjaun S, Dunbar E, Hardwick SW, Chirgadze DY, Hubbard J, van den Berg B, Newman H

PDB-9i98:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 13)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9q8n:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 16)
Method: single particle / : Allyjaun S, Newman H, Chirgadze DY, Hardwick SW, Hubbard J, van den Berg B, Dunbar E

EMDB-43225:
DH270.6 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43228:
VRC01 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43231:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43232:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43233:
CH505.M5.G458Y CE2 Design SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vgv:
DH270.6 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vgw:
VRC01 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh1:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh2:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh3:
CH505.M5.G458Y CE2 Design SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-50168:
Cryo-EM structure of Dopamine 3 Receptor:Go complex bound to bitopic FOB02-04A - Conformation A
Method: single particle / : Arroyo-Urea S, Garcia-Nafria J

EMDB-50169:
Cryo-EM structure of Dopamine 3 receptor:Go complex bound to bitopic FOB02-04A - Conformation B
Method: single particle / : Arroyo-Urea S, Garcia-Nafria J

PDB-9f33:
Cryo-EM structure of Dopamine 3 Receptor:Go complex bound to bitopic FOB02-04A - Conformation A
Method: single particle / : Arroyo-Urea S, Garcia-Nafria J

PDB-9f34:
Cryo-EM structure of Dopamine 3 receptor:Go complex bound to bitopic FOB02-04A - Conformation B
Method: single particle / : Arroyo-Urea S, Garcia-Nafria J

EMDB-27706:
Vaccine elicited Antibody MU89 bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

EMDB-27776:
Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

PDB-8dto:
Vaccine elicited Antibody MU89 bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

PDB-8dy6:
Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

EMDB-23545:
Cryo-EM structure of the wild-type human serotonin transporter complexed with vilazodone, imipramine and 15B8 Fab
Method: single particle / : Yang D, Kalenderoglou IE

EMDB-11997:
Structure of a nanoparticle for a COVID-19 vaccine candidate
Method: single particle / : Duyvesteyn HME, Stuart DI

PDB-7b3y:
Structure of a nanoparticle for a COVID-19 vaccine candidate
Method: single particle / : Duyvesteyn HME, Stuart DI

EMDB-0173:
Complex of foot-and-mouth-disease virus (type O1 M) with the Fab of antibody D9. The virus is at 3.5 Ang resolution, the Fab is flexibly attached and at much lower resolution.
Method: single particle / : Shimmon G, Kotecha A, Ren J, Asfor AS, Newman J, Berryman S, Cottam EM, Gold S, Tuthill TJ, King DP, Brocchi E, King AMQ, Owens R, Fry EE, Stuart DI, Burman A, Jackson T

EMDB-9401:
CH505 SOSIP.664 trimer in complex with DH522.2 Fab
Method: single particle / : Fera D, Harrison SC

EMDB-1552:
Molecular Architecture of the 'stressosome', a signal transduction hub
Method: single particle / : Marles-Wright J, Grant T, Delumeau O, van Duinen G, Firbank SJ, Lewis PJ, Murray JW, Newman JA, Quin MB, Race PR, Rohou A, Tichelaar W, van Heel M, Lewis RJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more