[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 112 items for (author: nakamura & n)

EMDB-53472:
Cryo-EM structure of rat SLCO2A1 in the apo state.
Method: single particle / : Deme JC, Goult J, Lea SM, Newstead S

EMDB-53481:
Cryo-EM structure of rat SLCO2A1 bound to zafirlukast.
Method: single particle / : Joshi C, Newstead S

EMDB-53482:
Cryo-EM structure of rat SLCO2A1 bound to fentiazac.
Method: single particle / : Joshi C, Newstead S

EMDB-53483:
Cryo-EM structure of rat SLCO2A1 bound to losartan.
Method: single particle / : Joshi C, Newstead S

EMDB-53484:
Cryo-EM structure of rat SLCO2A1 bound to prostaglandin E2.
Method: single particle / : Deme JC, Goult J, Lea SM, Newstead S

EMDB-53485:
Cryo-EM structure of rat SLCO2A1 bound to dinoprost.
Method: single particle / : Deme JC, Joshi C, Lea SM, Newstead S

EMDB-53486:
Cryo-EM structure of rat SLCO2A1 bound to tolcapone.
Method: single particle / : Deme JC, Joshi C, Lea SM, Newstead S

EMDB-63347:
Straight and symmetrical filament of the spirochete periplasmic flagella of Leptospira biflexa
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

EMDB-63348:
Core filament of the spirochete periplasmic flagella of Leptospira biflexa
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

EMDB-63349:
Straight and symmetrical filament of the spirochete periplasmic flagella of Leptospira biflexa deleted fcpB strain
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

EMDB-63350:
core filament of the spirochete periplasmic flagella of Leptospira biflexa deleted fcpB strain
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

EMDB-66641:
core filament of the spirochete periplasmic flagella of Leptospira biflexa wild type
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

EMDB-66642:
core filament of the spirochete periplasmic flagella of Leptospira biflexa from the flaA2-complemented stain
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

EMDB-66643:
core filament of the spirochete periplasmic flagella of Leptospira biflexa from the deleted fcpB_CL13 strain
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

EMDB-66646:
sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa from the flaA2-complemented stain
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

EMDB-66647:
Sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa from the deleted fcpB_CL13 strain
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

EMDB-66649:
sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa wild type
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

PDB-9lry:
Straight and symmetrical filament of the spirochete periplasmic flagella of Leptospira biflexa
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

PDB-9lrz:
Core filament of the spirochete periplasmic flagella of Leptospira biflexa
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

PDB-9ls0:
Straight and symmetrical filament of the spirochete periplasmic flagella of Leptospira biflexa deleted fcpB strain
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

PDB-9ls1:
core filament of the spirochete periplasmic flagella of Leptospira biflexa deleted fcpB strain
Method: helical / : Kawamoto A, Nakamura S, Koizumi N

PDB-9x7k:
core filament of the spirochete periplasmic flagella of Leptospira biflexa wild type
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

PDB-9x7l:
core filament of the spirochete periplasmic flagella of Leptospira biflexa from the flaA2-complemented stain
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

PDB-9x7m:
core filament of the spirochete periplasmic flagella of Leptospira biflexa from the deleted fcpB_CL13 strain
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

PDB-9x7s:
sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa from the flaA2-complemented stain
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

PDB-9x7v:
Sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa from the deleted fcpB_CL13 strain
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

PDB-9x80:
sheathed filament of the spirochete periplasmic flagella of Leptospira biflexa wild type
Method: single particle / : Kawamoto A, Nakamura S, Koizumi N

PDB-9ay5:
Tail-Baseplate of P1 bacteriophage
Method: single particle / : Nakamura T, Sen A, Terashi G, Kihara D

PDB-9ay2:
Inner tail tube of P1 bacteriophage
Method: helical / : Nakamura T, Sen A, Terashi G, Kihara D

PDB-9ay4:
Compressed tail sheath of P1 bacteriophage
Method: helical / : Nakamura T, Sen A, Terashi G, Kihara D

PDB-9ay3:
Tail sheath of P1 bacteriophage
Method: helical / : Nakamura T, Sen A, Terashi G, Kihara D

EMDB-61999:
Cryo-EM structure of USP7:DNMT1 complex; closed conformation
Method: single particle / : Nakamura N, Arita K

EMDB-62000:
Cryo-EM structure of USP7:DNMT1 complex; open conformation
Method: single particle / : Nakamura N, Arita K

PDB-9k2w:
Cryo-EM structure of USP7:DNMT1 complex; closed conformation
Method: single particle / : Nakamura N, Arita K

PDB-9k2x:
Cryo-EM structure of USP7:DNMT1 complex; open conformation
Method: single particle / : Nakamura N, Arita K

EMDB-60902:
Cryo-EM structure of the type IVb pilus from enterotoxigenic Escherichia coli
Method: helical / : Kawahara K, Oki H, Nakamura S

EMDB-60903:
Cryo-EM structure of the type I pilus from enterotoxigenic Escherichia coli
Method: helical / : Kawahara K, Oki H, Nakamura S

PDB-9iuf:
Cryo-EM structure of the type IVb pilus from enterotoxigenic Escherichia coli
Method: helical / : Kawahara K, Oki H, Nakamura S

PDB-9iug:
Cryo-EM structure of the type I pilus from enterotoxigenic Escherichia coli
Method: helical / : Kawahara K, Oki H, Nakamura S

EMDB-39184:
Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.2 variant) in complex with CeSPIACE
Method: single particle / : Suzuki H, Nakamura S, Fujiyoshi Y

EMDB-39185:
Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE, class 1
Method: single particle / : Suzuki H, Nakamura S, Fujiyoshi Y

EMDB-39186:
Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE, class 2
Method: single particle / : Suzuki H, Nakamura S, Fujiyoshi Y

PDB-8ydx:
Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.2 variant) in complex with CeSPIACE
Method: single particle / : Suzuki H, Nakamura S, Fujiyoshi Y

PDB-8ydy:
Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE, class 1
Method: single particle / : Suzuki H, Nakamura S, Fujiyoshi Y

PDB-8ydz:
Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE, class 2
Method: single particle / : Suzuki H, Nakamura S, Fujiyoshi Y

EMDB-39197:
Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

EMDB-39198:
Cryo-EM structure of the channelrhodopsin GtCCR2
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

EMDB-39199:
Cryo-EM structure of the channelrhodopsin GtCCR4
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

PDB-8yej:
Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

PDB-8yek:
Cryo-EM structure of the channelrhodopsin GtCCR2
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more