[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 8,550 items for (author: na & q)

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

PDB-9tzy:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

EMDB-55638:
Cryo-EM structure of the PseTnsAB paired-end complex (right end) in the presence of Mg
Method: single particle / : Finocchio G, Oberli S, Jinek M

EMDB-57833:
Cryo-EM structure of the PseTnsAB paired-end complex (right end) in the presence of Mn
Method: single particle / : Finocchio G, Oberli S, Jinek M

EMDB-57834:
Cryo-EM structure of the PseTnsAB paired-end complex (left end) in the presence of Mg
Method: single particle / : Finocchio G, Oberli S, Jinek M

PDB-30jv:
Cryo-EM structure of the PseTnsAB paired-end complex (right end) in the presence of Mn
Method: single particle / : Finocchio G, Oberli S, Jinek M

PDB-30jw:
Cryo-EM structure of the PseTnsAB paired-end complex (left end) in the presence of Mg
Method: single particle / : Finocchio G, Oberli S, Jinek M

PDB-9t7l:
Cryo-EM structure of the PseTnsAB paired-end complex (right end) in the presence of Mg
Method: single particle / : Finocchio G, Oberli S, Jinek M

EMDB-65508:
Cryo-EM structure of S1P2 in complex with heterotrimeric G protein
Method: single particle / : Wu B, Zhao Q, Tan Q

EMDB-65510:
cryoEM structure of S1P3 in complex with heterotrimeric G protein
Method: single particle / : Wu B, Zhao Q, Tan Q

PDB-9w0m:
Cryo-EM structure of S1P2 in complex with heterotrimeric G protein
Method: single particle / : Wu B, Zhao Q, Tan Q

PDB-9w0o:
cryoEM structure of S1P3 in complex with heterotrimeric G protein
Method: single particle / : Wu B, Zhao Q, Tan Q

EMDB-58124:
In situ subtomogram average of a ribosome bound to ribosome associated vesicle in primary neurons expressing KDEL tagged with mNeonGreen (mNeon-KDEL)
Method: subtomogram averaging / : Carter SD, Jensen GJ, Freyberg Z

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-64742:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

PDB-9v2w:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Li H, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

EMDB-55617:
Cryo-EM structure of the human LENG8-PCID2-DSS1 complex bound to UAP56 and RRP1B
Method: single particle / : Abbas DK, Bonneau F, Basquin J, Conti E, Schussler S, Wilkinson ME

EMDB-55619:
Cryo-EM structure of the human GANP-PCID2-DSS1 complex bound to UAP56
Method: single particle / : Abbas DK, Bonneau F, Basquin J, Conti E, Schussler S, Wilkinson ME

PDB-9t6l:
Cryo-EM structure of the human LENG8-PCID2-DSS1 complex bound to UAP56 and RRP1B
Method: single particle / : Abbas DK, Bonneau F, Basquin J, Conti E, Schussler S, Wilkinson ME

PDB-9t6n:
Cryo-EM structure of the human GANP-PCID2-DSS1 complex bound to UAP56
Method: single particle / : Abbas DK, Bonneau F, Basquin J, Conti E, Schussler S, Wilkinson ME

EMDB-75049:
Human Excitatory Amino Acid Transporter 3 in 300 mM potassium and 0.1 mM Cmpd 3e in the outward-facing (OFS) state
Method: single particle / : Earsley A, Qiu B, Boudker O

EMDB-80888:
Focused refinement cryo-EM map of the A/B/C subunits of the T=3 lake sinai virus 1 (delta N-terminal 48 residues) virus-like particle at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-54549:
Ternary complex structure of compound 1 bound to SMARCA2 bromodomain and DCAF16:DDB1deltaBPB
Method: single particle / : Spiteri VA, Nakasone MA, Casement R, Iso K, Cowan AD, Ciulli A

PDB-9s3r:
Ternary complex structure of compound 1 bound to SMARCA2 bromodomain and DCAF16:DDB1deltaBPB
Method: single particle / : Spiteri VA, Nakasone MA, Casement R, Iso K, Cowan AD, Ciulli A

EMDB-67623:
Cryo-EM structure of DddT in closed substrate-free conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67625:
Cryo-EM structure of DddT G101D in substrate-free outward open conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67626:
Cryo-EM structure of DddT in closed DMSP-bound conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67627:
Cryo-EM structure of DddT in closed substrate-free conformation in the presence of potassium ions and dimethylsulfoniopropionate
Method: single particle / : Zhu WJ, Wang P

EMDB-67628:
Cryo-EM structure of DddT G101D in substrate-free inward open conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21ff:
Cryo-EM structure of DddT in closed substrate-free conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fh:
Cryo-EM structure of DddT G101D in substrate-free outward open conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fi:
Cryo-EM structure of DddT in closed DMSP-bound conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fj:
Cryo-EM structure of DddT in closed substrate-free conformation in the presence of potassium ions and dimethylsulfoniopropionate
Method: single particle / : Zhu WJ, Wang P

PDB-21fk:
Cryo-EM structure of DddT G101D in substrate-free inward open conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-71975:
Human apo HCN1 nanodisc
Method: single particle / : Chinn A, Chanda B

EMDB-73857:
Human HCN1 in complex with cAMP in nanodisc
Method: single particle / : Chinn A, Chanda B

PDB-9pxn:
Human apo HCN1 nanodisc
Method: single particle / : Chinn A, Chanda B

PDB-9z6t:
Human HCN1 in complex with cAMP in nanodisc
Method: single particle / : Chinn A, Chanda B

EMDB-62834:
CryoEM structure of Arabidopsis thaliana D397N Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

PDB-9l5i:
CryoEM structure of Arabidopsis thaliana D397N Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

EMDB-62824:
CryoEM structure of Arabidopsis thaliana Col-0 Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

PDB-9l58:
CryoEM structure of Arabidopsis thaliana Col-0 Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

EMDB-62829:
CryoEM structure of Arabidopsis thaliana M309I Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

PDB-9l5d:
CryoEM structure of Arabidopsis thaliana M309I Rubisco with D4 symmetry
Method: single particle / : Yamori W, Nakazato I, Yuchen Q, Sanga Y, Miyata T, Uehara R, Noto Y, Namba K, Fukayama H, Matsumura H, Arimura S

EMDB-70721:
TMPRSS2 (S441A) bound to the HCoV-NL63 S2'region genetically fused to the HCoV-HKU1 RBD
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70722:
TMPRSS2 S441A in complex with the H1H7 Fab and anti-kappa light chain nanobody
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73656:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (Fab local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73657:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (S2 local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more