[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 142 items for (author: murayama & y)

EMDB-45493:
Rabbit RyR1 disease mutant Y523S in complex with FKBP12.6, nanodisc and inhibitor dantrolene in the absence of calcium
Method: single particle / : Iyer KA, Samso M

EMDB-45497:
Rabbit RyR1 disease mutant Y523S in complex with FKBP12.6, nanodisc and inhibitor dantrolene in the presence of activating calcium
Method: single particle / : Iyer KA, Samso M

EMDB-45584:
RyR1 disease mutant Y523S with FKBP12.6, nanodisc and inhibitor dantrolene in the absence of calcium with refined P1 domain
Method: single particle / : Iyer KA, Samso M

PDB-9cgp:
RyR1 disease mutant Y523S with FKBP12.6, nanodisc and inhibitor dantrolene in the absence of calcium with refined P1 domain
Method: single particle / : Iyer KA, Samso M

EMDB-45585:
Rabbit RyR1 disease mutant Y523S in complex with FKBP12.6, nanodisc and inhibitor dantrolene in the presence of activating calcium
Method: single particle / : Iyer KA, Samso M

EMDB-38398:
Structure of chimeric RyR complex with flubendiamide
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

EMDB-38417:
Structure of chimeric RyR Complex with tetraniliprole
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

EMDB-38447:
Structure of chimeric RyR
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

EMDB-38448:
Structure of chimeric RyR-I4657M/G4819E
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

EMDB-38551:
The map of chimeric RyR transmembrane domain in complex with flubendiamide after TMD local refinement
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Van Petegem F, Yuchi Z

EMDB-38553:
The map of chimeric RyR transmembrane domain in complex with tetraniliprole with TMD local refinement
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

EMDB-38908:
Structure of chimeric RyR-I4657M/G4819E complex with chlorantraniliprole
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

EMDB-60899:
Structure of a chimeric RyR-I4657M/G4819E (local refinement of TMD)
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

EMDB-60900:
Cryo-EM structure of ref-chiRyR (local refinement of TMD)
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Van Petegem F, Yuchi Z

EMDB-60901:
cryo-EM structure of chiRyR-I4657M/G4819E complex with CHL (local refinement of TMD)
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

PDB-8xji:
Structure of chimeric RyR complex with flubendiamide
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

PDB-8xkh:
Structure of chimeric RyR Complex with tetraniliprole
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

PDB-8xlf:
Structure of chimeric RyR
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

PDB-8xlh:
Structure of chimeric RyR-I4657M/G4819E
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

PDB-8y40:
Structure of chimeric RyR-I4657M/G4819E complex with chlorantraniliprole
Method: single particle / : Lin L, Wang C, Wang W, Jiang H, Yuchi Z

EMDB-39211:
Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

EMDB-39221:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

EMDB-39226:
Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

EMDB-39227:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

PDB-8yf5:
Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

PDB-8yfe:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

PDB-8yfq:
Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

PDB-8yfr:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

EMDB-50621:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 2)
Method: helical / : Arseni D, Ryskeldi-Falcon B

EMDB-50628:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1)
Method: helical / : Arseni D, Ryskeldi-Falcon B

PDB-9fof:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 2)
Method: helical / : Arseni D, Ryskeldi-Falcon B

PDB-9for:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1)
Method: helical / : Arseni D, Ryskeldi-Falcon B

EMDB-36223:
Cryo-EM structure of the GI.4 Chiba VLP complexed with the CV-1A1 Fv-clasp
Method: single particle / : Hosaka T, Katsura K, Kimura-Someya T, Someya Y, Shirouzu M

PDB-8jg5:
Cryo-EM structure of the GI.4 Chiba VLP complexed with the CV-1A1 Fv-clasp
Method: single particle / : Hosaka T, Katsura K, Kimura-Someya T, Someya Y, Shirouzu M

EMDB-27712:
Recombinant mouse RyR2 triple phosphonull mutant S2807A/S2813A/S2030A in complex with FKBP12.6 and nanodisc under closed-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

PDB-8dtz:
Recombinant mouse RyR2 triple phosphonull mutant S2807A/S2813A/S2030A in complex with FKBP12.6 and nanodisc under closed-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

EMDB-27711:
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under closed-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

PDB-8dty:
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under closed-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

EMDB-27746:
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

PDB-8dvv:
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

EMDB-36744:
Thermus thermophilus Rho-engaged RNAP elongation complex; EC part
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-36745:
Thermus thermophilus Rho-engaged RNAP elongation complex; Rho part
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-34996:
Thermus thermophilus RNA polymerase elongation complex
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-34997:
Thermus thermophilus RNA polymerase coreenzyme
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-34999:
Thermus thermophilus transcription termination factor Rho bound with ADP-BeF3
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-35000:
Thermus thermophilus RNA polymerase bound with an inverted Rho hexamer
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-35004:
Thermus thermophilus Rho-engaged RNAP elongation complex (composite structure)
Method: single particle / : Murayama Y, Ehara H, Sekine S

PDB-8hsg:
Thermus thermophilus RNA polymerase elongation complex
Method: single particle / : Murayama Y, Ehara H, Sekine S

PDB-8hsh:
Thermus thermophilus RNA polymerase coreenzyme
Method: single particle / : Murayama Y, Ehara H, Sekine S

PDB-8hsj:
Thermus thermophilus transcription termination factor Rho bound with ADP-BeF3
Method: single particle / : Murayama Y, Ehara H, Sekine S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more