[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 46 items for (author: modis & y)

EMDB-50111:
Cryo-EM structure of the I923V MDA5-dsRNA filament without nucleotide
Method: helical / : Singh R, Herrero del Valle A, Modis Y

EMDB-50136:
Cryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 81-degree helical twist
Method: helical / : Singh R, Herrero del Valle A, Modis Y

EMDB-50137:
Cryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 88-degree helical twist
Method: helical / : Singh R, Herrero del Valle A, Modis Y

EMDB-50150:
Cryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 73-degree helical twist
Method: helical / : Singh R, Herrero del Valle A, Modis Y

EMDB-50165:
Cryo-EM structure of the I923V MDA5-dsRNA filament in complex with ATP
Method: helical / : Singh R, Herrero del Valle A, Modis Y

EMDB-50175:
Cryo-EM structure of the A946T MDA5-dsRNA filament
Method: helical / : Singh R, Herrero del Valle A, Modis Y

PDB-9f0j:
Cryo-EM structure of the I923V MDA5-dsRNA filament without nucleotide
Method: helical / : Singh R, Herrero del Valle A, Modis Y

PDB-9f1u:
Cryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 81-degree helical twist
Method: helical / : Singh R, Herrero del Valle A, Modis Y

PDB-9f20:
Cryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 88-degree helical twist
Method: helical / : Singh R, Herrero del Valle A, Modis Y

PDB-9f2l:
Cryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 73-degree helical twist
Method: helical / : Singh R, Herrero del Valle A, Modis Y

PDB-9f2w:
Cryo-EM structure of the I923V MDA5-dsRNA filament in complex with ATP
Method: helical / : Singh R, Herrero del Valle A, Modis Y

PDB-9f3p:
Cryo-EM structure of the A946T MDA5-dsRNA filament
Method: helical / : Singh R, Herrero del Valle A, Modis Y

EMDB-13586:
Cryo-electron tomography of ASC signalling sites in pyroptotic cells (2)
Method: electron tomography / : Liu Y, Modis Y, Alemayehu H, Hopkins LJ, Borgeaud AC, Heroven C, Howe JD, Boulanger J, Bryant CE, Zhai H

EMDB-13585:
Cryo-electron tomography of ASC signalling sites in pyroptotic cells
Method: electron tomography / : Liu Y, Zhai H, Alemayehu H, Hopkins LJ, Borgeaud AC, Heroven C, Howe JD, Boulanger J, Bryant CE, Modis Y

EMDB-12288:
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4(main class)
Method: helical / : Yu Q, Modis Y

EMDB-12294:
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4(minor class)
Method: helical / : Yu Q, Modis Y

EMDB-11937:
CryoEM structure of the MDA5-dsRNA filament in complex with ADP with 92-degree helical twist
Method: helical / : Yu Q, Modis Y

EMDB-12092:
CryoEM structure of the MDA5-dsRNA filament in complex with ADP with 88-degree helical twist
Method: helical / : Yu Q, Modis Y

EMDB-12213:
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ATP
Method: helical / : Singh R, Herrero del Valle A

PDB-7bkp:
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ATP
Method: helical / : Singh R, Herrero del Valle A, Yu Q, Modis Y

PDB-7bkq:
CryoEM structure of MDA5-dsRNA filament in complex with ADP with 92-degree helical twist
Method: helical / : Yu Q, Modis Y

PDB-7nga:
CryoEM structure of the MDA5-dsRNA filament in complex with ADP with 88-degree helical twist
Method: helical / : Yu Q, Modis Y

PDB-7nic:
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4(minor class)
Method: helical / : Yu Q, Modis Y

PDB-7niq:
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4(Major class)
Method: helical / : Yu Q, Modis Y

EMDB-11630:
Envelope glycprotein of endogenous retrovirus Y032 (Atlas virus) from the human hookworm Ancylostoma ceylanicum
Method: single particle / : Mata CP, Merchant M

PDB-7a4a:
Envelope glycprotein of endogenous retrovirus Y032 (Atlas virus) from the human hookworm Ancylostoma ceylanicum
Method: single particle / : Mata CP, Merchant M, Modis Y

EMDB-0012:
CryoEM structure of the MDA5-dsRNA filament in complex with AMPPNP
Method: helical / : Yu Q, Qu K

EMDB-0023:
CryoEM structure of the MDA5-dsRNA filament in complex with ADP-AlF4
Method: helical / : Yu Q, Qu K

EMDB-0024:
CryoEM structure of the MDA5-dsRNA filament in complex with ATP (10 mM)
Method: helical / : Yu Q, Qu K

EMDB-0143:
CryoEM structure of the MDA5-dsRNA filament with 89 degree twist and without nucleotide
Method: helical / : Yu Q, Qu K

EMDB-0145:
CryoEM structure of the MDA5-dsRNA filament with 93 degree twist and without nucleotide
Method: helical / : Yu Q, Qu K

EMDB-4338:
CryoEM structure of the MDA5-dsRNA filament with 74-degree helical twist
Method: helical / : Yu Q, Qu K

EMDB-4340:
CryoEM structure of the MDA5-dsRNA filament with 87-degree helical twist
Method: helical / : Yu Q, Qu K

EMDB-4341:
CryoEM structure of the MDA5-dsRNA filament with 91-degree helical twist
Method: helical / : Yu Q, Qu K

PDB-6g19:
CryoEM structure of the MDA5-dsRNA filament with 74-degree helical twist
Method: helical / : Yu Q, Qu K, Modis Y

PDB-6g1s:
CryoEM structure of the MDA5-dsRNA filament with 87-degree helical twist
Method: helical / : Yu Q, Qu K, Modis Y

PDB-6g1x:
CryoEM structure of the MDA5-dsRNA filament with 91-degree helical twist
Method: helical / : Yu Q, Qu K, Modis Y

PDB-6gjz:
CryoEM structure of the MDA5-dsRNA filament in complex with AMPPNP
Method: helical / : Yu Q, Qu K, Modis Y

PDB-6gkh:
CryoEM structure of the MDA5-dsRNA filament in complex with ADP-AlF4
Method: helical / : Yu Q, Qu K, Modis Y

PDB-6gkm:
CryoEM structure of the MDA5-dsRNA filament in complex with ATP (10 mM)
Method: helical / : Yu Q, Qu K, Modis Y

PDB-6h61:
CryoEM structure of the MDA5-dsRNA filament with 89 degree twist and without nucleotide
Method: helical / : Yu Q, Qu K, Modis Y

PDB-6h66:
CryoEM structure of the MDA5-dsRNA filament with 93 degree twist and without nucleotide
Method: helical / : Yu Q, Qu K, Modis Y

EMDB-5444:
MDA5-dsRNA filament
Method: helical / : Berke IC, Yu X, Modis Y, Egelman EH

PDB-3j0a:
Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction
Method: single particle / : Modis Y, Zhou K, Kanai R, Lee P, Wang HW

EMDB-5287:
The single particle reconstruction of detergent-solubilized full-length human Toll-like receptor 5
Method: single particle / : Zhou K, Kanai R, Lee P, Wang HW, Modis Y

EMDB-5288:
The single particle reconstruction of the human Toll-like receptor 5 ectodomain in detergent
Method: single particle / : Zhou K, Kanai R, Lee P, Wang HW, Modis Y

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more