[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 40 items for (author: mishima & m)

EMDB-38466:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60136:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60146:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 1)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60147:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60148:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 3)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60149:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 4)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60150:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 5)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8xm7:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zj2:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zji:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 1)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zjj:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zjk:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 3)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zjl:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 4)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8zjm:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 5)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-36271:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8jhk:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-16776:
Human arginylated beta-actin
Method: single particle / : Pinto CS, Bakker SE, Suchenko A, Hussain H, Hatano T, Sampath K, Chinthalapudi K, Mishima M, Balasubramanian M

PDB-8cog:
Human arginylated beta-actin
Method: single particle / : Pinto CS, Bakker SE, Suchenko A, Hussain H, Hatano T, Sampath K, Chinthalapudi K, Mishima M, Balasubramanian M

EMDB-36178:
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-36179:
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-36180:
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-36181:
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-8jdj:
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-8jdk:
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-8jdl:
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-8jdm:
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33660:
Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33661:
Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33662:
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33663:
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33664:
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33665:
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7c:
Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7d:
Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7e:
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7f:
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7g:
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7h:
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-30802:
Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Kaushik R, Ehara H, Yokoyama T, Uchikubo-Kamo T, Mishima-Tsumagari C, Yonemochi M, Ikeda M, Hanada K, Zhang KYJ, Shirouzu M

PDB-7dpa:
Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Kaushik R, Ehara H, Yokoyama T, Uchikubo-Kamo T, Mishima-Tsumagari C, Yonemochi M, Ikeda M, Hanada K, Zhang KYJ, Shirouzu M

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more