[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,291 items for (author: meng & k)

EMDB-66217:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-66218:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-57364:
RNA polymerase II elongation complex with the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57390:
RNA polymerase II initially transcribing complex with a 2-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57401:
RNA polymerase II pre-initiation complex bound to ADP-BeF3 in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57691:
TFIID-containing RNA polymerase II pre-initiation complex in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57693:
RNA polymerase II initially transcribing complex with a 6-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

PDB-29tk:
RNA polymerase II elongation complex with the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

PDB-29vf:
RNA polymerase II initially transcribing complex with a 2-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

PDB-29wd:
RNA polymerase II initially transcribing complex with a 2-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

PDB-30ff:
TFIID-containing RNA polymerase II pre-initiation complex in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

PDB-30fh:
RNA polymerase II initially transcribing complex with a 6-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-66101:
The cryo-electron microscopy complex structure of PCV3 VLPs and antibody 2B5
Method: single particle / : Su J, Jiang Y, Li S, Zheng Q

EMDB-66102:
Cryo-EM structure of PCV3 VLPs
Method: single particle / : Su J, Jiang Y, Li S, Zheng Q

PDB-9wmq:
The cryo-electron microscopy complex structure of PCV3 VLPs and antibody 2B5
Method: single particle / : Su J, Jiang Y, Li S, Zheng Q

PDB-9wmr:
Cryo-EM structure of PCV3 VLPs
Method: single particle / : Su J, Jiang Y, Li S, Zheng Q

EMDB-63485:
The consensus map of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63580:
Cryo-EM structure of AKG bound OXGR1-Gq complex
Method: single particle / : Liu H, Zhang X, Xu HE

EMDB-63581:
Cryo-EM structure of Itaconic acid bound OXGR1-Gq complex
Method: single particle / : Liu H, Zhang X, Xu HE

EMDB-63583:
Cryo-EM structure of Succinic Acid bound OXGR1-Gq complex
Method: single particle / : Liu H, Zhang X, Xu HE

EMDB-80947:
Cryo-EM structure of Maleic Acid bound OXGR1-Gq complex
Method: single particle / : Zhang X, Liu H

PDB-26xh:
Cryo-EM structure of Maleic Acid bound OXGR1-Gq complex
Method: single particle / : Zhang X, Liu H

PDB-9m1r:
Cryo-EM structure of AKG bound OXGR1-Gq complex
Method: single particle / : Liu H, Zhang X, Xu HE

PDB-9m1s:
Cryo-EM structure of Itaconic acid bound OXGR1-Gq complex
Method: single particle / : Liu H, Zhang X, Xu HE

PDB-9m1u:
Cryo-EM structure of Succinic Acid bound OXGR1-Gq complex
Method: single particle / : Liu H, Zhang X, Xu HE

EMDB-65146:
Cryo-EM structure of SULTR-like phosphate distribution transporter
Method: single particle / : Liu Y, Zhang J, He H, Liu Z

EMDB-65155:
Cryo-EM structure of SULTR-like phosphate distribution transporter with phosphate
Method: single particle / : Liu Y, Zhang J, He H, Liu Z

PDB-9vky:
Cryo-EM structure of SULTR-like phosphate distribution transporter
Method: single particle / : Liu Y, Zhang J, He H, Liu Z

PDB-9vl5:
Cryo-EM structure of SULTR-like phosphate distribution transporter with phosphate
Method: single particle / : Liu Y, Zhang J, He H, Liu Z

EMDB-64587:
Local refinement of Succinate bound OXGR1
Method: single particle / : Liu H, Zhang X, Xu HE

EMDB-64588:
Local refinement of maleic acid bound OXGR1
Method: single particle / : Liu H, Zhang X, Xu HE

EMDB-64589:
Local refinement of ITA bound OXGR1
Method: single particle / : Liu H, Zhang X, Xu HE

EMDB-64590:
Local refinement of AKG bound OXGR1
Method: single particle / : Liu H, Zhang X, Xu HE

PDB-9uxn:
Local refinement of Succinate bound OXGR1
Method: single particle / : Liu H, Zhang X, Xu HE

PDB-9uxo:
Local refinement of maleic acid bound OXGR1
Method: single particle / : Liu H, Zhang X, Xu HE

PDB-9uxp:
Local refinement of ITA bound OXGR1
Method: single particle / : Liu H, Zhang X, Xu HE

PDB-9uxq:
Local refinement of AKG bound OXGR1
Method: single particle / : Liu H, Zhang X, Xu HE

EMDB-74628:
Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

PDB-9zrr:
Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

EMDB-80888:
Focused refinement cryo-EM map of the A/B/C subunits of the T=3 lake sinai virus 1 (delta N-terminal 48 residues) virus-like particle at pH 6.5
Method: single particle / : Chen NC, Wang CH, Chen CJ, Yoshimura M, Guan HH, Chuankhayan P, Lin CC

EMDB-62364:
5-fold block of empty Lake Sinai Virus 2
Method: single particle / : Meng K, Cui C, Zhang X, Meng G

EMDB-62365:
2-fold block of empty Lake Sinai Virus 2
Method: single particle / : Meng K, Cui C, Zhang X, Meng G

EMDB-62363:
3-fold block of native Lake Sinai Virus 2
Method: single particle / : Meng K, Cui C, Zhang X, Meng G

EMDB-62367:
3-fold block of empty Lake Sinai Virus 2
Method: single particle / : Meng K, Cui C, Zhang X, Meng G

EMDB-67623:
Cryo-EM structure of DddT in closed substrate-free conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67625:
Cryo-EM structure of DddT G101D in substrate-free outward open conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67626:
Cryo-EM structure of DddT in closed DMSP-bound conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67627:
Cryo-EM structure of DddT in closed substrate-free conformation in the presence of potassium ions and dimethylsulfoniopropionate
Method: single particle / : Zhu WJ, Wang P

EMDB-67628:
Cryo-EM structure of DddT G101D in substrate-free inward open conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21ff:
Cryo-EM structure of DddT in closed substrate-free conformation
Method: single particle / : Zhu WJ, Wang P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more