[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 79 items for (author: marko & j)

EMDB-51865:
RPL13 (eL13)-mutant 80S ribosome from mouse
Method: single particle / : Orgebin E, Astier A, Rinaldi D, Baud'huin M, Plisson-Chastang C

EMDB-47217:
Cryptococcus neoformans 40S Map
Method: single particle / : Erath J, Djuranovic S, Pavlovic Djuranovic S, Hashem Y

EMDB-47218:
Cryptococcus neoformans 60S ribosome
Method: single particle / : Erath J, Djuranovic S, Pavlovic Djuranovic S, Hashem Y

EMDB-47219:
Cryptococcus neoformans 40S Head Map
Method: single particle / : Erath J, Djuranovic S, Pavlovic Djuranovic S, Hashem Y

EMDB-47929:
Human LARP1 bound to the 40S small ribosomal subunit
Method: single particle / : Dong W, Kaufhold R, Brito Querido J

PDB-9ed0:
Human LARP1 bound to the 40S small ribosomal subunit
Method: single particle / : Dong W, Kaufhold R, Brito Querido J

EMDB-49523:
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

EMDB-49525:
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

PDB-9nlv:
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

PDB-9nlx:
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

EMDB-19819:
Glucose-6-phosphate dehydrogenase (G6PDH) in complex with protein OpcA from Synechocystis sp. PCC 6803, consensus map
Method: single particle / : Shvarev D

EMDB-19820:
Glucose-6-phosphate dehydrogenase (G6PDH) in complex with protein OpcA from Synechocystis sp. PCC 6803
Method: single particle / : Shvarev D

EMDB-19821:
Glucose-6-phosphate dehydrogenase (G6PDH) from Synechocystis sp. PCC 6803
Method: single particle / : Shvarev D

PDB-9emm:
Glucose-6-phosphate dehydrogenase (G6PDH) in complex with protein OpcA from Synechocystis sp. PCC 6803
Method: single particle / : Shvarev D

PDB-9emn:
Glucose-6-phosphate dehydrogenase (G6PDH) from Synechocystis sp. PCC 6803
Method: single particle / : Shvarev D

EMDB-45167:
Cryo-EM structure of E. coli AmpG
Method: single particle / : Sverak H, Worrall LJ, Strynadka NCJ

PDB-9c3f:
Cryo-EM structure of E. coli AmpG
Method: single particle / : Sverak H, Worrall LJ, Strynadka NCJ

EMDB-18245:
Plunge-frozen (control) map of beta-galactosidase
Method: single particle / : Esser TK, Boehning J, Bharat TAM, Rauschenbach S

EMDB-18244:
ESIBD structure of beta-galactosidase
Method: single particle / : Esser T, Boehning J, Bharat TAM, Rauschenbach S

PDB-8q7y:
ESIBD structure of beta-galactosidase
Method: single particle / : Esser T, Boehning J, Bharat TAM, Rauschenbach S

EMDB-40765:
Cryo-EM structure of the wild type P. aeruginosa flagellar filament
Method: single particle / : Kreutzberger MA, Nedeljkovic M, Egelman EH, Sundberg EJ

PDB-8sug:
Cryo-EM structure of the wild type P. aeruginosa flagellar filament
Method: single particle / : Kreutzberger MA, Nedeljkovic M, Egelman EH, Sundberg EJ

EMDB-15677:
Cryo-EM structure for mouse leptin in complex with the mouse LEP-R ectodomain (1:2 mLEP:mLEPR model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15678:
Mouse leptin:LEP-R complex cryoEM structure (3:3 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15679:
Cryo-EM structure for a 3:3 complex between mouse leptin and the mouse LEP-R ectodomain (local refinement)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15680:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (2:2 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15681:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (closed 3:3 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15683:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (open 3:3 model).
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15899:
Cryo-EM structure for the mouse LEPR-CRH2:Leptin:LEPR-Ig complex following symmetry expansion in combination with local refinement
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avb:
Cryo-EM structure for mouse leptin in complex with the mouse LEP-R ectodomain (1:2 mLEP:mLEPR model).
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avc:
Mouse leptin:LEP-R complex cryoEM structure (3:3 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avd:
Cryo-EM structure for a 3:3 complex between mouse leptin and the mouse LEP-R ectodomain (local refinement)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8ave:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (2:2 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avf:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (closed 3:3 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avo:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (open 3:3 model).
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8b7q:
Cryo-EM structure for the mouse LEPR-CRH2:Leptin:LEPR-Ig complex following symmetry expansion in combination with local refinement
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-28726:
Rat 80S ribosome purified from brain RNA granules. Class 1 40S subunit 2_5A resolution
Method: single particle / : Ortega J

EMDB-28727:
Rat 80S ribosome purified from brain RNA granules. Class 1 60S subunit 2_5A resolution.
Method: single particle / : Ortega J

EMDB-27025:
CRYO-EM STRUCTURE OF HUMAN 15-PGDH IN COMPLEX WITH SMALL MOLECULE SW222746
Method: single particle / : Huang W, Taylor DJ

EMDB-29005:
human 15-PGDH with NADH bound
Method: single particle / : Huang W, Taylor D

PDB-8cwl:
Cryo-EM structure of Human 15-PGDH in complex with small molecule SW222746
Method: single particle / : Huang W, Taylor DJ

PDB-8fd8:
human 15-PGDH with NADH bound
Method: single particle / : Huang W, Taylor D

EMDB-26517:
Rat 80S ribosome purified from brain RNA granules. Class 2 40S subunit.
Method: single particle / : Ortega J

EMDB-26518:
Rat 80S ribosome purified from brain RNA granules. Class 2 60S subunit.
Method: single particle / : Ortega J

EMDB-29538:
Rat 80S ribosome purified from brain RNA granules. Class 1 80S consensus
Method: single particle / : Ortega J

EMDB-29539:
Rat 80S ribosome purified from brain RNA granules. Class 2 80S consensus
Method: single particle / : Ortega J

EMDB-27010:
CRYO-EM STRUCTURE OF HUMAN 15-PGDH IN COMPLEX WITH SMALL MOLECULE SW209415
Method: single particle / : Huang W, Taylor DJ

PDB-8cvn:
Cryo-EM Structure of Human 15-PGDH in Complex with Small Molecule SW209415
Method: single particle / : Huang W, Taylor DJ

EMDB-14212:
Cryo-electron tomography of in vitro assembled Bruno and oskar 3'UTR RNA condensates
Method: electron tomography / : Bose M, Mahamid J

EMDB-14213:
Cryo-electron tomography of in vitro assembled Bruno and oskar full length RNA condensates
Method: electron tomography / : Bose M, Mahamid J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more