[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 256 items for (author: marcel & v)

EMDB-56237:
Cryo-EM structure of the extracellular domain of DC-SIGN
Method: single particle / : Balke A, Scheerer P

EMDB-48285:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

PDB-9mi8:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

EMDB-48313:
PARP1 ART in complex with HPF1 and EB47
Method: single particle / : Sverzhinsky A, Pascal JM

PDB-9mja:
PARP1 ART in complex with HPF1 and EB47
Method: single particle / : Sverzhinsky A, Pascal JM

EMDB-55761:
Cryo-EM map of mouse heavy chain apoferritin
Method: single particle / : Haubner M, Williams HM, Hruby J, Guskov A, Kovalev K, Drabbels M, Lorenz UJ, Straub MS

EMDB-55765:
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form
Method: single particle / : Haubner M, Williams HM, Hruby J, Straub MS, Guskov A, Kovalev K, Drabbels M, Lorenz UJ

EMDB-55766:
Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the K2 state
Method: single particle / : Haubner M, Williams HM, Hruby J, Straub MS, Guskov A, Kovalev K, Drabbels M, Lorenz UJ

EMDB-55769:
Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the O2 state
Method: single particle / : Haubner M, Williams HM, Hruby J, Straub MS, Guskov A, Kovalev K, Drabbels M, Lorenz UJ

PDB-9tbd:
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form
Method: single particle / : Haubner M, Williams HM, Hruby J, Straub MS, Guskov A, Kovalev K, Drabbels M, Lorenz UJ

PDB-9tbe:
Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the K2 state
Method: single particle / : Haubner M, Williams HM, Hruby J, Straub MS, Guskov A, Kovalev K, Drabbels M, Lorenz UJ

PDB-9tbf:
Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the O2 state
Method: single particle / : Haubner M, Williams HM, Hruby J, Straub MS, Guskov A, Kovalev K, Drabbels M, Lorenz UJ

EMDB-54058:
1.7 A structure of conventional mouse heavy chain Apoferritin
Method: single particle / : Curtis WA, Hruby J, Krueger CR, Barrass SV, Drabbels M, Lorenz UJ

EMDB-54082:
1.8 A structure of SiO2-sealed and revitrified (210 us) mouse heavy chain Apoferritin
Method: single particle / : Curtis WA, Hruby J, Krueger CR, Barrass SV, Drabbels M, Lorenz UJ

EMDB-54136:
2.5 A structure of the E.coli 50S ribosomal subunit
Method: single particle / : Curtis WA, Hruby J, Krueger CR, Barrass SV, Drabbels M, Lorenz UJ

EMDB-54137:
2.4 A structure of the SiO2-sealed and revitrified (30 us) E.coli 50S ribosomal subunit
Method: single particle / : Curtis WA, Hruby J, Krueger CR, Barrass SV, Drabbels M, Lorenz UJ

EMDB-54138:
2.3 A structure of the SiO2-sealed and revitrified (150 us) E.coli 50S ribosomal subunit
Method: single particle / : Curtis WA, Hruby J, Krueger CR, Barrass SV, Drabbels M, Lorenz UJ

EMDB-54168:
2.7 A structure of the SiO2-sealed and revitrified (300 us) E.coli 50S ribosomal subunit
Method: single particle / : Curtis WA, Hruby J, Krueger CR, Barrass SV, Drabbels M, Lorenz UJ

EMDB-49363:
Cryo-EM map of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Dolce LG, Santos CR, Murakami MT

EMDB-49364:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

PDB-9nfe:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

EMDB-70451:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex closed conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

EMDB-70453:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex 1 RBD up conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

EMDB-70454:
Apo SARS-COV-2-6P-MUT7 S PROTEIN closed conformation
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

EMDB-70455:
APO SARS-COV-2-6P-MUT7 S PROTEIN 1 RBD UP CONFORMATION
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

PDB-9og4:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex closed conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

PDB-9og5:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex 1 RBD up conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

PDB-9og6:
Apo SARS-COV-2-6P-MUT7 S PROTEIN closed conformation
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

PDB-9og7:
APO SARS-COV-2-6P-MUT7 S PROTEIN 1 RBD UP CONFORMATION
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

EMDB-44559:
Apo form Mre11-Rad50 complex
Method: single particle / : Yu Y, Patel DJ

PDB-9bi5:
Apo form Mre11-Rad50 complex
Method: single particle / : Yu Y, Patel DJ

EMDB-53294:
Structure of the Azotobacter vinelandii NifL-NifA complex
Method: single particle / : Bueno Batista M, Richardson J, Webster MW, Ghilarov D, Peters JW, Lawson DM, Dixon R

PDB-9qq6:
Structure of the Azotobacter vinelandii NifL-NifA complex
Method: single particle / : Bueno Batista M, Richardson J, Webster MW, Ghilarov D, Peters JW, Lawson DM, Dixon R

EMDB-70416:
Cryo-EM Structure of Human HIF-2a-ARNT Complexed on 20-bp HRE
Method: single particle / : Xu X, Closson JD, Zhang M, Gardner KH

EMDB-70418:
Dimer of HIF-2a-ARNT Heterodimers Complexed on 51-bp HRE/HAS
Method: single particle / : Closson JD, Xu X, Gardner KH

EMDB-70443:
Dimer of HIF-1a-ARNT Heterodimers Complexed on 52-bp HRE/HAS
Method: single particle / : Closson JD, Tiyani TT, Xu X, Gardner KH

PDB-9of0:
Cryo-EM Structure of Human HIF-2a-ARNT Complexed on 20-bp HRE
Method: single particle / : Xu X, Closson JD, Zhang M, Gardner KH

PDB-9of2:
Dimer of HIF-2a-ARNT Heterodimers Complexed on 51-bp HRE/HAS
Method: single particle / : Closson JD, Xu X, Gardner KH

PDB-9ofu:
Dimer of HIF-1a-ARNT Heterodimers Complexed on 52-bp HRE/HAS
Method: single particle / : Closson JD, Tiyani TT, Xu X, Gardner KH

EMDB-50336:
Cryo-EM structure of the ternary DARPin NY_1/HLA-A0201/NY-ESO1 complex.
Method: single particle / : Schulte T, Wallden K, Carroni M, Sandalova T, Walser M, Mueller S, Venetz N, Achour A

PDB-9fe1:
Cryo-EM structure of the ternary DARPin NY_1/HLA-A0201/NY-ESO1 complex.
Method: single particle / : Schulte T, Wallden K, Carroni M, Sandalova T, Walser M, Mueller S, Venetz N, Achour A

EMDB-44558:
cryo EM structure of dsDNA bound Mre11-Rad50 complex
Method: single particle / : Yu Y, Patel DJ

PDB-9bi4:
cryo EM structure of dsDNA bound Mre11-Rad50 complex
Method: single particle / : Yu Y, Patel DJ

EMDB-51744:
Cryo-EM map conventional T20S proteasome
Method: single particle / : Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

EMDB-51745:
Cryo-EM map of revitrified T20S proteasome
Method: single particle / : Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

EMDB-51746:
Cryo-EM map of deposited and revitrified T20S proteasome
Method: single particle / : Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

EMDB-51747:
Cryo-EM map of conventional 50S ribosomal subunit
Method: single particle / : Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

EMDB-51748:
Cryo-EM map of revitrified 50S ribosomal subunit
Method: single particle / : Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

EMDB-51749:
Cryo-EM map of deposited and revitrified 50S ribosomal subunit
Method: single particle / : Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

EMDB-51750:
Cryo-EM map of conventional 50S ribosomal subunit used as control for shaped pulses
Method: single particle / : Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more