[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 502 items for (author: maj & m)

EMDB-70050:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

EMDB-70051:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70052:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70054:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70478:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

PDB-9o2x:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

PDB-9o2y:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70169:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70171:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3C-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70172:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-HA-BCCP Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70055:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70056:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70356:
Structure of the MOR/Gi/Lofentanil Complex, Nucleotide Free
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70357:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-Primed
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70358:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-1
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70359:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2, G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70360:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2', G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70361:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global and G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70362:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global 3DVA Sorted 1
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70363:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global 3DVA Sorted 2
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9ode:
Structure of the MOR/Gi/Lofentanil Complex, Nucleotide Free
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odf:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-Primed
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odg:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-1
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odh:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2, G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odi:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2', G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70367:
Structure of the MOR/Gi/Mitragynine Pseudoindoxil Complex, GTP-bound G-Primed, Consensus Refinement
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70368:
Structure of the MOR/Gi/Mitragynine Pseudoindoxil Complex, GTP-bound G-ACT-2/3 Consensus Refinement
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70369:
Structure of the MOR/Gi/DAMGO Complex, Nucleotide Free, Baseline
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70370:
Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-Primed
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70371:
Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-ACT-2
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70372:
Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-ACT-3
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70375:
Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-Primed, AHD-Sorted
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-71776:
CryoEM structure of delta opioid receptor bound to G proteins and Naltrindole
Method: single particle / : Fay JF, Che T

EMDB-71777:
CryoEM structure of delta opioid receptor bound to G proteins and naltrexone
Method: single particle / : Fay JF, Che T

EMDB-71778:
CryoEM structure of delta opioid receptor bound to G proteins and met-enkephalin
Method: single particle / : Fay JF, Che T

EMDB-71779:
CryoEM structure of delta opioid receptor bound to G proteins and SNC80
Method: single particle / : Fay JF, Che T

EMDB-71780:
CryoEM structure of delta opioid receptor bound to G proteins and ADL5859
Method: single particle / : Fay JF, Che T

EMDB-70373:
Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-ACT-1
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70374:
Structure of the MOR/Gi/DAMGO Complex, GTP-Bound, G-ACT-2/3 Consensus Refinement
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-72469:
Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72470:
Structure of naked mole-rat ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72475:
Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72482:
Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72483:
Structure of guinea pig ribosome with P/E-tRNA and mRNA
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-74615:
Structure of naked mole-rat ribosome (non-rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y42:
Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y44:
Structure of naked mole-rat ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y49:
Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y4g:
Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y4h:
Structure of guinea pig ribosome with P/E-tRNA and mRNA
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more