[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,464 items for (author: lisa & m)

EMDB-55350:
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "short" coiled-coil domain
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

EMDB-55353:
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "long" coiled-coil domain
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

EMDB-55355:
Symmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

PDB-9syj:
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "short" coiled-coil domain
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

PDB-9syt:
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "long" coiled-coil domain
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

PDB-9syv:
Symmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

EMDB-71966:
Ammonia monooxygenase in native membranes from N. briensis
Method: single particle / : Frank FJ, Rosenzweig AC

PDB-9pxf:
Ammonia monooxygenase in native membranes from N. briensis
Method: single particle / : Frank FJ, Rosenzweig AC

EMDB-52419:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Open Tetramer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52420:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed1 tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52421:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed2 tetramer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52422:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Empty monomer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52423:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor-monomer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52424:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Cofactor/ligand-monomer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52425:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor/ligand-monomer in Open tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52426:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor/ligand-monomer in Closed1 tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52427:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor/ligand-monomer in Closed2 tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52428:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Total-monomer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-52429:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed2 tetramer with cofactor/ligand-monomer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9hux:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Open Tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9huy:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed1 tetramer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9huz:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Closed2 tetramer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9hv0:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Empty monomer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9hv4:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. cofactor-monomer.
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9hv5:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Cofactor/ligand-monomer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

PDB-9hv6:
CryoEM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis obtained in the presence of NAD+ and L-glutamate. Total-monomer
Method: single particle / : Lazaro M, Chamorro N, Lopez-Alonso JP, Charro D, Rasia RM, Jimenez-Oses G, Valle M, Lisa MN

EMDB-47886:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, consensus map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47887:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, CARF domain focus refined map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47888:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, deaminase domain focus refined map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47890:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-48116:
CRISPR-associated deaminase Cad1 in Apo form
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9ebt:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9eka:
CRISPR-associated deaminase Cad1 in Apo form
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9qcd:
Micro-ED structure of the NSH2-CSH2 tandem domain of SHP2 in complex with the bis-phosphorylated pY627-pY659-Gab1 (613-694) peptide
Method: electron crystallography / : Machner L, Shaikhqasem A, Hamdi F, Breithaupt C, Parthier C, Kyrilis FL, Kastritis PL, Feller SM, Stubbs MT

EMDB-70660:
Human PORCN bound to inhibitor C59
Method: single particle / : Black KA, Venugopal H, Glukhova A

EMDB-70661:
Human PORCN bound to inhibitor ETC159
Method: single particle / : Black KA, Venugopal H, Glukhova A

EMDB-70662:
Apo Human PORCN
Method: single particle / : Black KA, Venugopal H, Glukhova A

PDB-9oo6:
Human PORCN bound to inhibitor C59
Method: single particle / : Black KA, Venugopal H, Glukhova A

PDB-9oo7:
Human PORCN bound to inhibitor ETC159
Method: single particle / : Black KA, Venugopal H, Glukhova A

PDB-9oo8:
Apo Human PORCN
Method: single particle / : Black KA, Venugopal H, Glukhova A

EMDB-52570:
Cryo-EM structure of mouse RNF213 (WB3/WB4 + ATP)
Method: single particle / : Grabarczyk DB, Ahel J, Clausen T

EMDB-52571:
Cryo-EM structure of mouse RNF213:UBE2L3 transthiolation intermediate, chemically stabilized, and ATPgS
Method: single particle / : Grabarczyk DB, Ahel J, Clausen T

PDB-9i1i:
Cryo-EM structure of mouse RNF213 (WB3/WB4 + ATP)
Method: single particle / : Grabarczyk DB, Ahel J, Clausen T

PDB-9i1j:
Cryo-EM structure of mouse RNF213:UBE2L3 transthiolation intermediate, chemically stabilized, and ATPgS
Method: single particle / : Grabarczyk DB, Ahel J, Clausen T

EMDB-49740:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49741:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49742:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

PDB-9nrx:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nry:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nrz:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more