[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 611 items for (author: lin & sj)

EMDB-64131:
Structure of SARS-CoV-2 spike-CD147 complex at 3.75 Angstroms resolution
Method: single particle / : Zhang SJ, Yang ZW, Lin P, Bian HJ, Zhu P, Zhang L, Chen ZN

EMDB-47531:
T4 bacteriophage replicative holoenzyme, DNA in right Polymerase(State 1)
Method: single particle / : Li H, Feng X

EMDB-47824:
T4 bacteriophage replicative holoenzyme, DNA in left Polymerase(State 2)
Method: single particle / : Li H, Feng X

EMDB-47825:
T4 bacteriophage replicative holoenzyme with triple mutants D75R, Q430E, and K432E on exo- Polymerase
Method: single particle / : Li H, Feng X

EMDB-47826:
T4 bacteriophage replicative holoenzyme, DNA in left Polymerase(State 3)
Method: single particle / : Li H, Feng X

EMDB-62387:
The map of StnY-DNA complex
Method: single particle / : Yang X, Yang SQ, Zheng JT, Lin SJ

EMDB-53247:
Tau Paired Helical Filaments using PAD12 for seeding in primary mouse neurons
Method: helical / : Lovestam S, Scheres SHW

EMDB-53461:
Tau (297-391) assembled in the presence of CuCl2
Method: helical / : Lovestam S, Scheres SHW

EMDB-53462:
Tau(297-408 S396D S400D T403D S404D) head to head fold type 1
Method: helical / : Lovestam S, Scheres SHW

EMDB-53463:
Tau(297-391) filaments PHF fold
Method: helical / : Lovestam S, Scheres SHW

EMDB-53464:
Tau(297-408 S396D S400D T403D S404D) head to head fold type 2
Method: helical / : Lovestam S, Scheres SHW

EMDB-47928:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 (focused refinement of NTD and WRAIR-2008)
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

EMDB-48284:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with neutralizing human antibody WRAIR-2008
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

EMDB-51309:
DNA origami clamp positioner with attachment helices for interlocking into a larger multimeric DNA origami complex
Method: single particle / : Aquilina M, Wilkens GD, Singleton M, Biela A, Abendstein L, Oton J, Sharp TH, Mey ASJS, Heddle JG, Dunn KE

EMDB-48248:
scFv antibody CL33 bound to R-phycoerythrin
Method: single particle / : Rashleigh L, Gully BS

EMDB-48332:
4D4 TCR bound to R-phycoerythrin
Method: single particle / : Rashleigh L, Gully BS, Rossjohn J

EMDB-70139:
Phycoerythrin bound by 1C5H TCR (complex consensus map)
Method: single particle / : Rashleigh L, Venugopal H, Rossjohn J, Gully BS

EMDB-70155:
Local refinement of 1C5H TCR bound to R-phycoerythrin (gamma chain dimer)
Method: single particle / : Rashleigh L, Venugopal H, Rossjohn J, Gully BS

EMDB-70156:
1C5H TCR bound to R-phycoerythrin
Method: single particle / : Rashleigh L, Venugopal H, Rossjohn J, Gully BS

EMDB-70157:
1C5H TCR bound to R-phycoerythrin
Method: single particle / : Rashleigh L, Venugopal H, Rossjohn J, Gully BS

PDB-9mgb:
scFv antibody CL33 bound to R-phycoerythrin
Method: single particle / : Rashleigh L, Gully BS

PDB-9mko:
4D4 TCR bound to R-phycoerythrin
Method: single particle / : Rashleigh L, Gully BS, Rossjohn J

PDB-9o60:
Local refinement of 1C5H TCR bound to R-phycoerythrin (gamma chain dimer)
Method: single particle / : Rashleigh L, Venugopal H, Rossjohn J, Gully BS

PDB-9o61:
R-phycoerythrin
Method: single particle / : Rashleigh L, Venugopal H, Rossjohn J, Gully BS

PDB-9o62:
1C5H TCR bound to R-phycoerythrin
Method: single particle / : Rashleigh L, Venugopal H, Rossjohn J, Gully BS

EMDB-51365:
Cryo-EM structure of human SLC45A4 in lipid nanodiscs
Method: single particle / : Markusson S, Newstead S

EMDB-51377:
Cryo-EM structure of human SLC45A4 in detergent
Method: single particle / : Markusson S, Deme JC, Lea SM, Newstead S

EMDB-49728:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

EMDB-60092:
vibrio parahaemolyticus transcription factor ApHB
Method: single particle / : Wang HC, Chang YC, Lin SJ, Huang HJ

EMDB-52203:
Cryo-EM structure of CD36 protein complex with Fab
Method: single particle / : Nazarov S, Yu YR

EMDB-48154:
single particle cryo EM density of full length rat Kir4.1
Method: single particle / : Lee SJ, Mount J, Nichols CG

EMDB-44113:
Haspin bound to nucleosome in position 1
Method: single particle / : Hicks CW, Wolberger C

EMDB-45577:
Cryo-EM Structural Analysis of Human Integrin Heterodimer bound to DNA Aptamer
Method: single particle / : Wang T

EMDB-50518:
LGTV with TBEV prME
Method: single particle / : Bisikalo K, Rosendal E

EMDB-50624:
LGTV TP21. Langat virus, strain TP21
Method: single particle / : Bisikalo K, Rosendal E

EMDB-45979:
Cryo-EM filament structure in FTLD-synuclein
Method: helical / : Yang Y, Scheres HWS, Goedert M

PDB-9cx6:
Cryo-EM filament structure in FTLD-synuclein
Method: helical / : Yang Y, Scheres HWS, Goedert M

EMDB-18621:
ASCT2 trimer in lipid nanodiscs with bound glutamine and Na+ ions in the outward-facing state (OFS)
Method: single particle / : Borowska A, Rheinberger J, Paulino C, Slotboom DJ

EMDB-18622:
ASCT2 protomer in lipid nanodiscs with bound glutamine and Na+ ions in the outward-facing state (OFS.1)
Method: single particle / : Borowska A, Rheinberger J, Paulino C, Slotboom DJ

EMDB-18623:
ASCT2 protomer in lipid nanodiscs with bound glutamine and Na+ ions in the outward-facing state (OFS.2)
Method: single particle / : Borowska A, Rheinberger J, Paulino C, Slotboom DJ

EMDB-18624:
ASCT2 protomer in lipid nanodiscs with bound glutamine and Na+ ions in the outward-facing state (OFS.3)
Method: single particle / : Borowska A, Rheinberger J, Paulino C, Slotboom DJ

EMDB-18625:
ASCT2 protomer in lipid nanodiscs with bound glutamine and Na+ ions in the intermediate outward-facing state (iOFS-up)
Method: single particle / : Borowska A, Rheinberger J, Paulino C, Slotboom DJ

EMDB-18626:
ASCT2 protomer in lipid nanodiscs with bound glutamine and Na+ ions in the intermediate outward-facing state (iOFS-down)
Method: single particle / : Borowska A, Rheinberger J, Paulino C, Slotboom DJ

EMDB-18627:
ASCT2 protomer in lipid nanodiscs under low Na+ concentration in the outward-facing state (OFS)
Method: single particle / : Borowska A, Rheinberger J, Paulino C, Slotboom DJ

EMDB-18628:
ASCT2 protomer in lipid nanodiscs under low Na+ concentration in the intermediate outward-facing state (iOFS-up)
Method: single particle / : Borowska A, Rheinberger J, Paulino C, Slotboom DJ

EMDB-19846:
PHF type tau filament from V337M mutant
Method: helical / : Qi C, Scheres SHW, Michel G

EMDB-19849:
PHF type tau filament from V337M mutant
Method: helical / : Qi C, Scheres SHW, Michel G

EMDB-19852:
PHF type tau filament from V337M mutant
Method: helical / : Qi C, Scheres SHW, Michel G

PDB-9eo7:
PHF type tau filament from V337M mutant
Method: helical / : Qi C, Scheres SHW, Michel G

PDB-9eo9:
SF type tau filament from V337M mutant
Method: helical / : Qi C, Scheres SHW, Michel G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more