[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 74 items for (author: liko & i)

EMDB-52712:
Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
Method: single particle / : Novotna M, Boissier F, Balikova Novotna G, Innis CA

PDB-9i89:
Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
Method: single particle / : Novotna M, Boissier F, Balikova Novotna G, Innis CA

EMDB-52711:
Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
Method: single particle / : Novotna M, Boissier F, Balikova Novotna G, Innis CA

PDB-9i88:
Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
Method: single particle / : Novotna M, Boissier F, Balikova Novotna G, Innis CA

EMDB-52338:
TTLL11 bound to microtubule
Method: single particle / : Barinka C, Campbell J, Desfosses A, Gutsche I

PDB-9hq4:
TTLL11 bound to microtubule
Method: single particle / : Barinka C, Campbell J, Desfosses A, Gutsche I

EMDB-46632:
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Method: single particle / : Pichkur EB, Panteleev PV, Konevega AL

PDB-9d89:
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Method: single particle / : Pichkur EB, Panteleev PV, Konevega AL

EMDB-19548:
cryoEM structure of Acs1 filament determined by FilamentID
Method: helical / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19549:
cryoEM structure of the central Ald4 filament determined by FilamentID
Method: single particle / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19550:
cryoEM structure of purified Acs1 filament from meiotic yeast cells
Method: single particle / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19551:
cryo sub-tomogram average of Acs1 filament from spread meiotic yeast spheroplasts
Method: subtomogram averaging / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19552:
cryo sub-tomogram average of Ald4 filaments from purified meiotic yeast mitochondria
Method: subtomogram averaging / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19553:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in mitochondria
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19554:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in the nucleus
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19555:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in the cytoplasm
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19556:
cryo-tomogram of purified meiotic yeast mitochondrion containing Ald4 filaments
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19557:
cryo-tomogram of spread meiotic yeast spheroplast containing Acs1 filaments
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-19558:
cryo-tomogram of spread starved yeast spheroplast containing filaments
Method: electron tomography / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

PDB-8rwj:
cryoEM structure of Acs1 filament determined by FilamentID
Method: helical / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

PDB-8rwk:
cryoEM structure of the central Ald4 filament determined by FilamentID
Method: single particle / : Hugener J, Xu J, Wettstein R, Ioannidi L, Velikov D, Wollweber F, Henggeler A, Matos J, Pilhofer M

EMDB-34920:
Capsid of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34949:
Capsid of DT57C bacteriophage in the empty state
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34952:
Neck of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34955:
Baseplate of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34968:
Straight fiber of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34972:
Tail tube of DT57C bacteriophage in the full state
Method: helical / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34973:
Curved tail segment of the DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35003:
Focused refinement of the TTrP region of the neck of the DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35006:
Map of the neck of the DT57C bacteriophage in the full state with C12 symmetry
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35099:
Consensus refinement for the baseplate of DT57C bacteriophage
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35100:
Focused refinement of the baseplate of DT57C focused around its core region
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35101:
Focused refinement of the baseplate of DT57C focused around the baseplate hub protein
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37449:
Focused map for the TMP N-terminus of DT57C
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37518:
Tomogram of DT57C bacteriophage (1 of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37519:
Tomogram of DT57C bacteriophage (2 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37521:
Tomogram of DT57C bacteriophage (3 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37531:
Tomogram of DT57C bacteriophage (4 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37534:
Tomogram of DT57C bacteriophage (5 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37536:
Tomogram of DT57C bacteriophage (6 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37539:
Tomogram of DT57C bacteriophage (7 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37543:
Tomogram of DT57C bacteriophage (8 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37544:
Tomogram of DT57C bacteriophage (9 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8ho3:
Capsid of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hqk:
Capsid of DT57C bacteriophage in the empty state
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hqo:
Neck of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hqz:
Baseplate of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hre:
Straight fiber of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hrg:
Tail tube of DT57C bacteriophage in the full state
Method: helical / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-16389:
Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce (Picea babies) at 2.8 Angstrom resolution
Method: single particle / : Kopecny D, Semchonok DA, Kouril R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more