[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,774 items for (author: lei & d)

EMDB-66544:
Structure Of the KEOPS dimer
Method: single particle / : Zhang ZL, Zhou L, Jin MQ, Lei DS, Zhang WH

EMDB-66545:
Structure Of the KEOPS-tRNA
Method: single particle / : Zhang ZL, Zhou L, Jin MQ, Lei DS, Zhang WH

PDB-9x4g:
Structure Of the KEOPS dimer
Method: single particle / : Zhang ZL, Zhou L, Jin MQ, Lei DS, Zhang WH

PDB-9x4h:
Structure Of the KEOPS-tRNA
Method: single particle / : Zhang ZL, Zhou L, Jin MQ, Lei DS, Zhang WH

EMDB-71616:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

PDB-9pfz:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

EMDB-75049:
Human Excitatory Amino Acid Transporter 3 in 300 mM potassium and 0.1 mM Cmpd 3e in the outward-facing (OFS) state
Method: single particle / : Earsley A, Qiu B, Boudker O

EMDB-47893:
Cryo-EM map of 2 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-47895:
Cryo-EM map of 4 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-70607:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9om5:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-75818:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

PDB-11lt:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

EMDB-52502:
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (composite map)
Method: single particle / : Grabarczyk DB, Clausen T

EMDB-75894:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

PDB-11ov:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

EMDB-47885:
Cryo-EM local map of dimerized VRC36 Fabs
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-55652:
Composite map of LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55653:
Consensus map of LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55654:
Focused map of LRRC58-CDO1 region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55655:
Focused map of CUL2-LRRC58-EloC interface region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55656:
Focused map of ARIH1-Ub region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55658:
Structure of LRRC58-EloB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55659:
Consensus Map of LRRC58-ELOB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55660:
Focused map of LRRC58-CDO1 region from LRRC58-ELOB/C-CDO1-CUL5-RBX2-NEDD8-ARIH2-UB
Method: single particle / : Stier L, Andree GA, Schulman BA

PDB-9t7v:
Structure of LRRC58-EloB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-71745:
Composite map of hypomethylated 80S ribosome treated with hygromycin B
Method: single particle / : Zhao Y, Li H

PDB-9pn5:
Composite map of hypomethylated 80S ribosome treated with hygromycin B
Method: single particle / : Zhao Y, Li H

EMDB-75048:
Human Excitatory Amino Acid Transporter 3 in 300 mM potassium and 0.1 mM Cmpd 3e in the intermediate outward-facing (iOFS) state
Method: single particle / : Earsley A, Qiu B, Boudker O

EMDB-71075:
Consensus map of CXCL9-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71077:
Focused map of CXCL9-CXCR3
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71078:
Focused map of Gi-scFv16 (components of CXCL9-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71079:
Composite map of CXCL9-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71080:
Composite map of CXCL10-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71081:
Composite map of CXCL11-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71082:
consensus map of CXCL11-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71083:
Focused map of CXCL11-CXCR3 (components of CXCL11-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71084:
Focused map of Gi_scFv16 (components of CXCL11-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71085:
consensus map of CXCL10-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71086:
Focused map of CXCL10-CXCR3 (components of CXCL10-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-71087:
Focused map of Gi-scFv16 (components of CXCL10-CXCR3-Gi-scFv16)
Method: single particle / : Sun D, Masureel M, Johnson M

PDB-9p0k:
Composite map of CXCL9-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

PDB-9p0l:
Composite map of CXCL10-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

PDB-9p0m:
Composite map of CXCL11-CXCR3-Gi-scFv16
Method: single particle / : Sun D, Masureel M, Johnson M

EMDB-49964:
Global map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemaglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48419:
Beta1-tryptase monomer bound to inhibitory Fabs E82.AS and E104.v2
Method: single particle / : Azumaya CM, Maun HR, Rohou AL

PDB-9mnb:
Beta1-tryptase monomer bound to inhibitory Fabs E82.AS and E104.v2
Method: single particle / : Azumaya CM, Maun HR, Rohou AL

EMDB-64966:
Cryo-EM structure of semi-closed state of Botulinum neurotoxin serotype A at pH 7.4
Method: single particle / : Zerang Z, Liu Z, He J, Wang X, Qi F, Lei D, Zhi D, Wang D

PDB-9vcs:
Cryo-EM structure of semi-closed state of Botulinum neurotoxin serotype A at pH 7.4
Method: single particle / : Zerang Z, Liu Z, He J, Wang X, Qi F, Lei D, Zhi D, Wang D

EMDB-66143:
Complex of FMDV O/18074 and porcine-derived neutralizing monoclonal antibody pO18-10
Method: single particle / : Wu S, Zhu Z, Lei D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more