[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,314 items for (author: lee & y)

EMDB-51105:
Dissociated FMDV SAT2 Pentamer in complex with ultralong Fab117
Method: single particle / : Clarke JD, Duyvesteyn HME, Ren J, Fry EE, Owens RJ, Stuart DI, Hammond JA

PDB-9g6v:
Dissociated FMDV SAT2 Pentamer in complex with ultralong Fab117
Method: single particle / : Clarke JD, Duyvesteyn HME, Ren J, Fry EE, Owens RJ, Stuart DI, Hammond JA

EMDB-50531:
Cryo-electron tomogram of Aureispira sp. CCB-QB1
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50533:
Cryo-electron tomogram of cryoFIB-milled Aureispira sp. CCB-QB1 mixed with Vibrio campbellii
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50544:
Cryo-electron tomogram of cryoFIB-milled Aureispira sp. CCB-QB1 and Vibrio campbellii
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50548:
cryo-electron tomogram of Aureispira sp. CCB-QB1
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50551:
Cryo-electron tomogram of cryoFIB-milled Aureispira sp. CCB-QB1 and Vibrio campbellii
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50554:
Subtomogram averaging of the extracellular antenna in closed state of a type 6 secretion system in Aureispira sp. CCB-QB1
Method: subtomogram averaging / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50555:
subtomogram averaging of antenna in open state of a type 6 secretion in Aureispira sp. CCB-QB1
Method: subtomogram averaging / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50556:
subtomogram averaging of the baseplate of a type 6 secretion system in Aureispira sp. CCB-QB1
Method: subtomogram averaging / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50557:
subtomogram averaging of the trans-envelope complex of a type 6 secretion system of Aureispira sp. CCB-QB1
Method: subtomogram averaging / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50558:
Subtomogram average of the distal hook region of the extracellular grappling hooks in Aureispira sp. CCB-QB1
Method: subtomogram averaging / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-47327:
Computationally Designed Bifaceted Protein Nanomaterial pD5-14
Method: single particle / : Car KD, Borst AJ, Weidle C

EMDB-50522:
Progesterone-bound DB3 Fab in complex with computationally designed DBPro1156_2 protein binder
Method: single particle / : Pacesa M, Marchand A, Correia BE

EMDB-50537:
CryoEM structure of the neck (1403-2314) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50538:
CryoEM structure of the fragment-3 (2061-2397) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50539:
CryoEM structure of the fragment-1 (3402-3733) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50540:
CryoEM structure of the fragment-5 (2393-2807) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50541:
CryoEM structure of the fragment-6 (3571-4078) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50542:
CryoEM structure of the fragment-4 (4074-4421) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50543:
CryoEM structure of the base (4151-5009) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-51127:
CryoEM structure of the fragment-2 (2892-3236) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

PDB-9flp:
CryoEM structure of the neck (1403-2314) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

PDB-9fls:
CryoEM structure of the fragment-3 (2061-2397) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

PDB-9flu:
CryoEM structure of the fragment-1 (3402-3733) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

PDB-9flv:
CryoEM structure of the fragment-5 (2393-2807) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

PDB-9flw:
CryoEM structure of the fragment-6 (3571-4078) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

PDB-9flx:
CryoEM structure of the fragment-4 (4074-4421) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

PDB-9fly:
CryoEM structure of the base (4151-5009) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

PDB-9g8b:
CryoEM structure of the fragment-2 (2892-3236) in the grappling hook protein A (GhpA) in the bacterium Aureispira sp. CCB-QB1
Method: single particle / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9asd:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9au2:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43174:
GPCysRRLL-I53-50A in complex with rabbit 187 wk 30 GPC-A, base, and fusion peptide epitope pAbs
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43175:
GPCysRRLL-I53-50A in complex with rabbit 187 wk 18 GPC-A, base, and fusion peptide epitope pAbs
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43176:
GPCysRRLL-I53-50A in complex with rabbit 188 wk 30 base epitope pAbs
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43177:
GPCysRRLL-I53-50A in complex with rabbit 189 wk 30 GPC-A and base epitope pAbs
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43178:
GPCysRRLL-I53-50A in complex with rabbit 189 wk 18 GPC-A and base epitope pAbs
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43179:
GPCysRRLL-I53-50A in complex with rabbit 190 wk 30 fusion peptide and base epitope pAbs
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43180:
GPCysRRLL-I53-50A in complex with rabbit 191 wk 30 base epitope pAbs
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43181:
GPCysRRLL-I53-50A in complex with rabbit 192 wk 30 base and fusion peptide epitope pAbs
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43182:
GPCysRRLL-I53-50A in complex with base-targeting mAb LAVA05
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-43183:
GPCysRRLL-I53-50A in complex with base-targeting mAb LAVA06
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-45905:
Lineage IV Lassa virus glycoprotein (Josiah) in complex with polyclonal antibody (Base-2 epitope) from rabbit 190
Method: single particle / : Brouwer PJM, Perrett HR, Ward AB

EMDB-45136:
Infectious B19V capsid
Method: single particle / : Lee H, Hafenstein S

EMDB-45160:
Infectious B19V capsid
Method: single particle / : Lee H, Hafenstein S

EMDB-45184:
Infectious B19V capsid
Method: single particle / : Lee H, Hafenstein S

EMDB-46607:
Infectious B19V capsid
Method: single particle / : Lee H, Hafenstein S

EMDB-42775:
Acinetobacter baumannii Tse15 Rhs effector, toxin cleavage mutant (D1369N, D1391N)
Method: single particle / : Hayes BK, Venugopal H, McGowan S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more