[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 9,003 items for (author: lan & j)

EMDB-70517:
Anthoceros agrestis Rubisco (8 RbcL and 8 RbcS1) head to head stacking.
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-70520:
A. agrestis Rubisco (8 RbcL 7 RbcS 1 RbcS-STAR)
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-73040:
cryoEM map of Apo Aspergillus fumigatus acetolactate synthase (ALS)
Method: single particle / : Hu Y

EMDB-73041:
cryoEM structure of Aspergillus fumigatus acetolactate synthase (ALS) in complex with a novel inhibitor
Method: single particle / : Hu Y

PDB-9yjz:
cryoEM structure of Apo Aspergillus fumigatus acetolactate synthase (ALS)
Method: single particle / : Hu Y

PDB-9yk0:
cryoEM structure of Aspergillus fumigatus acetolactate synthase (ALS) in complex with a novel inhibitor
Method: single particle / : Hu Y

EMDB-70050:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

EMDB-70051:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70052:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70054:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70478:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

PDB-9o2x:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

PDB-9o2y:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-62620:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q, Xia N

EMDB-65522:
Cryo-EM structure of a 1C4 SpyTag-SpyCatcher mi3 nanoparticle
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-65523:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9kwy:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9w14:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-47105:
Cryo-EM structure of SerRS dimer in complex with two SIRT2
Method: single particle / : Yang J, Zhang Q, Zhang H, Lander G, Yang X

PDB-9dpi:
Cryo-EM structure of SerRS dimer in complex with two SIRT2
Method: single particle / : Yang J, Zhang Q, Zhang H, Lander G, Yang X

EMDB-47103:
Cryo-EM structure of SerRS dimer in complex with one SIRT2
Method: single particle / : Yang J, Zhang Q, Zhang H, Lander GC, Yang X

PDB-9dpd:
Cryo-EM structure of SerRS dimer in complex with one SIRT2
Method: single particle / : Yang J, Zhang Q, Zhang H, Lander GC, Yang X

EMDB-70055:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70056:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-52847:
Structure of Teneurin-Like Protein (TLP)
Method: single particle / : Raoelijaona F, Zhou J, El-Omari K, Lowe ED, Seiradake E

PDB-9ifo:
Structure of Teneurin-Like Protein (TLP)
Method: single particle / : Raoelijaona F, Zhou J, El-Omari K, Lowe ED, Seiradake E

EMDB-47752:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-47805:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e93:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e9v:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-53686:
Prefusion stabilized spike glycoprotein of human coronavirus OC43.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

EMDB-53687:
Prefusion stabilized spike glycoprotein of equine coronavirus.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

EMDB-48285:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

PDB-9mi8:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

EMDB-73107:
Uncrosslinked hClpXP composite map
Method: single particle / : Chen W

PDB-9ykx:
Un-crosslinked hClpX
Method: single particle / : Chen WC

EMDB-70356:
Structure of the MOR/Gi/Lofentanil Complex, Nucleotide Free
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70357:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-Primed
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70358:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-1
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70359:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2, G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70360:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2', G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70361:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global and G Protein Local
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70362:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global 3DVA Sorted 1
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70363:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-ACT-2/3, Global 3DVA Sorted 2
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9ode:
Structure of the MOR/Gi/Lofentanil Complex, Nucleotide Free
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9odf:
Structure of the MOR/Gi/Lofentanil Complex, GTP-bound G-Primed
Method: single particle / : Robertson MJ, Skiniotis G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more