[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 155 items for (author: kusakizako & t)

EMDB-63360:
Inward-open Structure of human B0AT1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62888:
Structure of SID-1 in complex with dsRNA (dodecameric form)
Method: single particle / : Murakoshi S, Kumazaki K, Kusakizako T, Nureki O

PDB-9l8o:
Structure of SID-1 in complex with dsRNA (dodecameric form)
Method: single particle / : Murakoshi S, Kumazaki K, Kusakizako T, Nureki O

EMDB-62886:
Structure of SID-1 in complex with dsRNA
Method: single particle / : Kumazaki K, Kusakizako T, Nishizawa T, Nureki O

EMDB-62887:
Structure of SID-1
Method: single particle / : Kumazaki K, Kusakizako T, Nishizawa T, Nureki O

PDB-9l8m:
Structure of SID-1 in complex with dsRNA
Method: single particle / : Kumazaki K, Kusakizako T, Nishizawa T, Nureki O

PDB-9l8n:
Structure of SID-1
Method: single particle / : Kumazaki K, Kusakizako T, Nishizawa T, Nureki O

EMDB-62633:
Structure of human B0AT1-ACE2 complex with compound1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62634:
Structure of human B0AT1-ACE2 complex with compound3
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62635:
Structure of human B0AT1-ACE2 complex with compound1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62627:
Structure of human B0AT1-ACE2 complex with compound1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62628:
Structure of human B0AT1-ACE2 complex with compound 2
Method: single particle / : Hiraizumi M, Miyaguchi I

EMDB-62629:
Structure of human B0AT1-ACE2 complex with compound3
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62630:
Structure of human B0AT1-ACE2
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62631:
Inward-open Structure of human B0AT1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62632:
Structure of human B0AT1-ACE2 complex with compound1
Method: single particle / : Imazu T, Miyaguchi I

EMDB-60263:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

PDB-8zmz:
Cryo-EM structure of R-eLACCO2 in the lactate-bound state
Method: single particle / : Kamijo Y, Kusakizako T, Nureki O, Campbell RE, Nasu Y

EMDB-63324:
Cryo-EM structure of the histamine H1 receptor-Gs protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63325:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Receptor focused)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63326:
Cryo-EM structure of the histamine H1 receptor-Gi protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63327:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Overall)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

PDB-9lrb:
Cryo-EM structure of the histamine H1 receptor-Gs protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

PDB-9lrc:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Receptor focused)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

PDB-9lrd:
Cryo-EM structure of the histamine H1 receptor-Gi protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

PDB-9lre:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Overall)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-39431:
Structure of Cas9-sgRNA ribonucleoprotein bound to nucleosome
Method: single particle / : Nagamura R, Kujirai T, Kusakizako T, Hirano H, Kurumizaka H, Nureki O

PDB-8yny:
Structure of Cas9-sgRNA ribonucleoprotein bound to nucleosome
Method: single particle / : Nagamura R, Kujirai T, Kusakizako T, Hirano H, Kurumizaka H, Nureki O

EMDB-61746:
Cryo-EM structure of PTH-PTH1R-Gq (upright state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61747:
Cryo-EM structure of PTH-PTH1R-Gq (tilted state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61795:
Cryo-EM structure of PTH-PTH1R-Gq complex (upright state; consensus refinement)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61796:
Cryo-EM structure of PTH-PTH1R-Gq complex (upright state; receptor focused refinement)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61797:
Cryo-EM structure of PTH-PTH1R-Gq complex (tilted state; consensus refinement map)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61798:
Cryo-EM structure of PTH-PTH1R-Gq complex (tilted state; focused refinement map)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

PDB-9jr2:
Cryo-EM structure of PTH-PTH1R-Gq (upright state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

PDB-9jr3:
Cryo-EM structure of PTH-PTH1R-Gq (tilted state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-36204:
Human sodium-dependent vitamin C transporter 1 in an apo inward-open state
Method: single particle / : Kobayashi TA, Kusakizako T, Nureki O

PDB-8jez:
Human sodium-dependent vitamin C transporter 1 in an apo inward-open state
Method: single particle / : Kobayashi TA, Kusakizako T, Nureki O

EMDB-36201:
Human sodium-dependent vitamin C transporter 1 bound to L-ascorbic acid in an inward-open state
Method: single particle / : Kobayashi TA, Kusakizako T, Nureki O

EMDB-36205:
Human sodium-dependent vitamin C transporter 1 in an intermediate state
Method: single particle / : Kobayashi TA, Kusakizako T, Nureki O

EMDB-36206:
Human sodium-dependent vitamin C transporter 1 in an apo occluded state
Method: single particle / : Kobayashi TA, Kusakizako T, Nureki O

PDB-8jew:
Human sodium-dependent vitamin C transporter 1 bound to L-ascorbic acid in an inward-open state
Method: single particle / : Kobayashi TA, Kusakizako T, Nureki O

PDB-8jf0:
Human sodium-dependent vitamin C transporter 1 in an intermediate state
Method: single particle / : Kobayashi TA, Kusakizako T, Nureki O

PDB-8jf1:
Human sodium-dependent vitamin C transporter 1 in an apo occluded state
Method: single particle / : Kobayashi TA, Kusakizako T, Nureki O

EMDB-34305:
the human PTH1 receptor bound to an intracellular biased agonist
Method: single particle / : Kobayashi K, Kusakizako T, Okamoto HH, Nureki O, Yamashita K, Nishizawa T, Kato HE

PDB-8gw8:
the human PTH1 receptor bound to an intracellular biased agonist
Method: single particle / : Kobayashi K, Kusakizako T, Okamoto HH, Nureki O

EMDB-34803:
Cryo-EM structure of the Cas12m2-crRNA-target DNA full R-loop complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

EMDB-34804:
Cryo-EM structure of the Cas12m2-crRNA-target DNA ternary complex intermediate state
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

EMDB-34824:
Cryo-EM structure of the Cas12m2-crRNA binary complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

PDB-8hhl:
Cryo-EM structure of the Cas12m2-crRNA-target DNA full R-loop complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more