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Showing all 50 items for (author: kikuchi & t)

EMDB-63650:
Cryo-EM structure of Arabidopsis thaliana MET1 (aa:621-1534) in complex with hemimethylated DNA analog
Method: single particle / : Kikuchi A, Arita K

EMDB-63652:
Cryo-EM structure of Arabidopsis thaliana MET1
Method: single particle / : Kikuchi A, Arita K

PDB-9m5u:
Cryo-EM structure of Arabidopsis thaliana MET1 (aa:621-1534) in complex with hemimethylated DNA analog
Method: single particle / : Kikuchi A, Arita K

PDB-9m5x:
Cryo-EM structure of Arabidopsis thaliana MET1
Method: single particle / : Kikuchi A, Arita K

EMDB-61999:
Cryo-EM structure of USP7:DNMT1 complex; closed conformation
Method: single particle / : Nakamura N, Arita K

EMDB-62000:
Cryo-EM structure of USP7:DNMT1 complex; open conformation
Method: single particle / : Nakamura N, Arita K

PDB-9k2w:
Cryo-EM structure of USP7:DNMT1 complex; closed conformation
Method: single particle / : Nakamura N, Arita K

PDB-9k2x:
Cryo-EM structure of USP7:DNMT1 complex; open conformation
Method: single particle / : Nakamura N, Arita K

EMDB-38573:
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated PAF15 and hemimethylated DNA analog
Method: single particle / : Kikuchi A, Hayashi G, Kori S, Arita K

PDB-8xqc:
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated PAF15 and hemimethylated DNA analog
Method: single particle / : Kikuchi A, Hayashi G, Kori S, Arita K

EMDB-38198:
hCDCA7 bound to nucleosome with hemimethylated CpG in 3'-linker DNA
Method: single particle / : Hiruta M, Shikimachi R, Kikuchi A, Nishiyama A, Funabiki H, Arita K

EMDB-38199:
hCDCA7 in complexed with linker DNA including hemimethylated CpG
Method: single particle / : Hiruta M, Shikimachi R, Kikuchi A, Nishiyama A, Funabiki H, Arita K

EMDB-39594:
Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.
Method: single particle / : Kikuchi A, Shikimachi R, Nishiyama A, Funabiki H, Arita K

PDB-8yv8:
Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.
Method: single particle / : Kikuchi A, Shikimachi R, Nishiyama A, Funabiki H, Arita K

EMDB-34588:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (3.2 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34589:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (3.9 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34590:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (3.9 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34591:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (4.7 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34592:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (4.8 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34593:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 3
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34594:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (4.5 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34595:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34596:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 2
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34597:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 3
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8hag:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (3.2 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8hah:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (3.9 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8hai:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (4.7 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8haj:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (4.8 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8hak:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (4.5 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8hal:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8ham:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 2
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8han:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 3
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-33200:
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-ordered form)
Method: single particle / : Onoda H, Kikuchi A, Kori S, Yoshimi S, Yamagata A, Arita K

EMDB-33201:
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-disordered form)
Method: single particle / : Onoda H, Kikuchi A, Kori S, Yoshimi S, Yamagata A, Arita K

EMDB-33298:
Cryo-EM map of apo-DNMT1 (aa:351-1616)
Method: single particle / : Onoda H, Kikuchi A, Kori S, Yoshimi S, Yamagata A, Matsuzawa S, Arita K

EMDB-33299:
Cryo-EM map of DNMT1 (aa:351-1616) in complex with ubiquitinated H3
Method: single particle / : Onoda H, Kikuchi A, Kori S, Yoshimi S, Yamagata A, Arita K

PDB-7xi9:
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-ordered form)
Method: single particle / : Onoda H, Kikuchi A, Kori S, Yoshimi S, Yamagata A, Arita K

PDB-7xib:
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-disordered form)
Method: single particle / : Onoda H, Kikuchi A, Kori S, Yoshimi S, Yamagata A, Arita K

EMDB-32192:
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES DIMER
Method: single particle / : Tani K, Kanno R

EMDB-32193:
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U
Method: single particle / : Tani K, Kanno R

PDB-7vy2:
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES DIMER
Method: single particle / : Tani K, Kanno R, Kawamura S, Kikuchi R, Nagashima KVP, Hall M, Takahashi A, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

PDB-7vy3:
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U
Method: single particle / : Tani K, Kanno R, Kawamura S, Kikuchi R, Nagashima KVP, Hall M, Takahashi A, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

EMDB-31400:
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES MONOMER
Method: single particle / : Tani K, Nagashima VP

PDB-7f0l:
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES MONOMER
Method: single particle / : Tani K, Nagashima VP, Kanno R, Kawamura S, Kikuchi R, Ji XC, Hall M, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

EMDB-3662:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T

EMDB-3663:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T

PDB-5no3:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

PDB-5no4:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

EMDB-3661:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
Method: single particle / : Lopez-Alonso JP, Kaminishi T

PDB-5no2:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
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External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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