[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 290 items for (author: jonas & s)

EMDB-71616:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

PDB-9pfz:
Architecture of human Voltage Dependent Anion Channel 1 in nanodiscs
Method: single particle / : Modaresi SM, Degen M, Hiller S

EMDB-56440:
CryoEM map of chloroplastic photosynthetic NADP(+)-dependent malic enzyme
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56441:
CryoEM map of chloroplastic photosynthetic NADP(+)-dependent malic enzyme mutant (G200R) at pH 8
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56442:
CryoEM map of chloroplastic photosynthetic NADP(+)-dependent malic enzyme mutant (G200R) at pH 4.8
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56443:
CryoEM map of dimeric non-photosynthetic NADP(+)-dependent malic enzyme
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56444:
CryoEM map of tetrameric non-photosynthetic NADP(+)-dependent malic enzyme
Method: single particle / : Drakonaki A, Gatsogiannis C

EMDB-56104:
A LINC complex lattice in the nuclear envelope of ejaculated human sperm
Method: subtomogram averaging / : Moecking J, Zeev-Ben-Mordhai T

EMDB-53260:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo9:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-75514:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

PDB-10xu:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

EMDB-56238:
In situ cryo-ET subtomogram averaged map of Flotillin complex
Method: subtomogram averaging / : Li D, Lizarrondo J, Wilfling F

EMDB-56295:
In situ cryo-ET tomogram of a lysosomal structure in untreated HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56296:
In situ cryo-ET tomogram of lysosome damaged by LLOMe (0.5mM, 60min) in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56297:
In situ cryo-ET of lysosome damaged by LLOMe (0.5mM, 60min) encapsulated in an autophagosome in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56298:
In situ cryo-ET tomogram of lysosomes in BAPTA AM pre-treated (50uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56300:
In situ cryo-ET tomogram of lysosomes in LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56327:
In situ cryo-ET tomogram of lysosomal structure in untreated rat hippocampal neurons
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-56329:
In situ cryo-ET tomogram of lysosomes in E64d pre-treated (20uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56330:
In situ cryo-ET tomogram of lysosomal structure in LLOMe-treated (0.5mM, 1h) rat hippocampal neuron.
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-53259:
Inward-open structure of human GABA transporter 3 bound to selective inhibitor SR-THAP
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo8:
Inward-open structure of human GABA transporter 3 bound to selective inhibitor SR-THAP
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-53008:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

PDB-9qcc:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

EMDB-53279:
Cryo_EM density map of human FAN1 in complex with CAG-2 loop DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Thomsen M

EMDB-47490:
Cryo-EM structure of the human P2X7 receptor in the apo closed state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-47491:
Cryo-EM structure of the human P2X7 receptor in the ATP-bound open state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-47492:
Cryo-EM structure of the human P2X7 receptor in the UB-ALT-P30-bound inhibited state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-47493:
Cryo-EM structure of the human P2X7 receptor in the UB-MBX-46-bound inhibited state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-47494:
Cryo-EM structure of the mouse P2X7 receptor in the apo closed state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3m:
Cryo-EM structure of the human P2X7 receptor in the apo closed state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3n:
Cryo-EM structure of the human P2X7 receptor in the ATP-bound open state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3o:
Cryo-EM structure of the human P2X7 receptor in the UB-ALT-P30-bound inhibited state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3p:
Cryo-EM structure of the human P2X7 receptor in the UB-MBX-46-bound inhibited state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

PDB-9e3q:
Cryo-EM structure of the mouse P2X7 receptor in the apo closed state
Method: single particle / : Oken AC, Turcu AL, Vazquez S, Mansoor SE

EMDB-51699:
Cryo-EM structure of the capsid-forming phage-inducible chromosomal island (cf-PICI) EcCI2
Method: single particle / : Patkowski JB, Penades JR, Costa TRD

PDB-9gyi:
Cryo-EM structure of the capsid-forming phage-inducible chromosomal island (cf-PICI) EcCI2
Method: single particle / : Patkowski JB, Penades JR, Costa TRD

EMDB-52203:
Cryo-EM structure of CD36 protein complex with Fab
Method: single particle / : Nazarov S, Yu YR

EMDB-50600:
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

PDB-9fno:
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

EMDB-19844:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-19850:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-51680:
Cryo_EM structure of human FAN1 R507H mutant in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9eo1:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9eoa:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9gy0:
Cryo_EM structure of human FAN1 R507H mutant in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-50444:
Cryo-EM structure of human CD163 SRCR2-4 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

EMDB-50570:
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

PDB-9fhb:
Cryo-EM structure of human CD163 SRCR2-4 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more