[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,421 items for (author: hu & nj)

EMDB-56604:
CryoEM structure of carbon monoxide dehydrogenase from Ruminococcus flavefaciens
Method: single particle / : Srinivas V, Hogbom M

PDB-28lw:
CryoEM structure of carbon monoxide dehydrogenase from Ruminococcus flavefaciens
Method: single particle / : Srinivas V, Hogbom M

EMDB-66146:
5-HT2AR bound to LSD in complex with mini-Gq and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Chen Y, Yu J, Liu Z, Wang S, Cheng J

EMDB-66152:
5-HT2AR bound to IHCH-1904 in complex with mini-Gq and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Chen Y, Yu J, Liu Z, Wang S, Cheng J

EMDB-66159:
5-HT2AR bound to IHCH-6122 in complex with mini-Gq and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Chen Y, Yu J, Liu Z, Wang S, Cheng J

EMDB-66160:
5-HT2AR bound to IHCH-1906 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Chen Y, Yu J, Liu Z, Wang S, Cheng J

EMDB-66164:
5-HT2B receptor bound to IHCH-1906 in complex with an antibody obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Yu J, Liu Z, Wang S, Cheng J

EMDB-66165:
5-HT2B receptor bound to IHCH-6122 in complex with an antibody obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Yu J, Liu Z, Wang S, Cheng J

PDB-9wpq:
5-HT2AR bound to LSD in complex with mini-Gq and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Chen Y, Yu J, Liu Z, Wang S, Cheng J

PDB-9wpx:
5-HT2AR bound to IHCH-1904 in complex with mini-Gq and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Chen Y, Yu J, Liu Z, Wang S, Cheng J

PDB-9wq5:
5-HT2AR bound to IHCH-6122 in complex with mini-Gq and scFv16 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Chen Y, Yu J, Liu Z, Wang S, Cheng J

PDB-9wq6:
5-HT2AR bound to IHCH-1906 obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Chen Y, Yu J, Liu Z, Wang S, Cheng J

PDB-9wqa:
5-HT2B receptor bound to IHCH-1906 in complex with an antibody obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Yu J, Liu Z, Wang S, Cheng J

PDB-9wqb:
5-HT2B receptor bound to IHCH-6122 in complex with an antibody obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Li H, Tang L, Zhang J, Meng B, Cao D, Yu J, Liu Z, Wang S, Cheng J

EMDB-68735:
local reifnement of 5HT2AR-miniGq heterotrimer in complex with a psychedelic psilocin
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

EMDB-68737:
local refinement of 5HT2AR-miniGq heterotrimer in complex with a selective agonist IHCH-2330
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

EMDB-68739:
local refinement of 5HT2BR-fab heterotrimer in complex with a novel antagonist IHCH-2330
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

PDB-22wp:
local reifnement of 5HT2AR-miniGq heterotrimer in complex with a psychedelic psilocin
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

PDB-22wr:
local refinement of 5HT2AR-miniGq heterotrimer in complex with a selective agonist IHCH-2330
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

PDB-22wt:
local refinement of 5HT2BR-fab heterotrimer in complex with a novel antagonist IHCH-2330
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

EMDB-66823:
Cryo-EM structure of the Bavachalcone bound FFAR4-Giq complex
Method: single particle / : Zhu S, Wang Z

EMDB-66824:
Cryo-EM structure of the Bavachalcone bound GPR120-Giq complex (local refinement)
Method: single particle / : Zhu S, Wang Z

PDB-9xfi:
Cryo-EM structure of the Bavachalcone bound FFAR4-Giq complex
Method: single particle / : Zhu S, Wang Z

PDB-9xfj:
Cryo-EM structure of the Bavachalcone bound GPR120-Giq complex (local refinement)
Method: single particle / : Zhu S, Wang Z

EMDB-66190:
The in situ structure of adjacent conoid fibers from Toxoplasma gondii tachyzoite
Method: subtomogram averaging / : Li Z, Du W, Yang J, Lai D, Lun Z, Guo Q

EMDB-66114:
5HT2AR-miniGq heterotrimer in complex with a psychedelic psilocin
Method: single particle / : Cao M, Li H, Cheng J, Wang S, Tang L, Ji X

EMDB-66116:
5HT2AR-miniGq heterotrimer in complex with a selective agonist IHCH-2330
Method: single particle / : Tang L, Ji Y, Cheng J, Wang S

EMDB-66117:
5HT2BR-fab heterotrimer in complex with a novel antagonist IHCH-2330
Method: single particle / : Tang L, Ji Y, Cheng J, Wang S

PDB-9wnd:
5HT2AR-miniGq heterotrimer in complex with a psychedelic psilocin
Method: single particle / : Cao M, Li H, Cheng J, Wang S, Tang L, Ji X

PDB-9wnf:
5HT2AR-miniGq heterotrimer in complex with a selective agonist IHCH-2330
Method: single particle / : Tang L, Ji Y, Cheng J, Wang S

PDB-9wng:
5HT2BR-fab heterotrimer in complex with a novel antagonist IHCH-2330
Method: single particle / : Tang L, Ji Y, Cheng J, Wang S

EMDB-73556:
the structure of ERMA complex with ATPrS and Mg++
Method: single particle / : Shi N, Jiang Y

EMDB-73630:
the structure of ERMA Mg2+ bound form
Method: single particle / : Shi N, Jiang Y

PDB-9ywq:
the structure of ERMA complex with ATPrS and Mg++
Method: single particle / : Shi N, Jiang Y

PDB-9yyd:
the structure of ERMA Mg2+ bound form
Method: single particle / : Shi N, Jiang Y

EMDB-55897:
DDK-salt stripped phosphorylated MCM2-7 DH
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55904:
Cryo-EM structure of MCM2-7 DH bound to Sld3-Sld7 (composite map)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55918:
Cryo-EM structure of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (composite map)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55972:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (consensus map, 882k particles)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55973:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: C2 DH core)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55974:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld3 MRD1:Mcm6)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55975:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld3 MRD2:Mcm4)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55976:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld7:Mcm6)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55980:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist states consensus map, 511k particles)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55981:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state I)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55982:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state II)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55983:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state III)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55985:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (consensus map, 107k particles)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55986:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: C2 DH core)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55987:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: Sld3 MRD1/2:Mcm4/6)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more